Factsheet for TraesCS5D01G122000.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G111900.1	Wheat	cytosol	44.32	98.76
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	95.53	95.18
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	97.02	93.2
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	82.12	80.77
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	77.28	76.71
OQU79014	Sorghum	plastid	69.27	70.32
CDY27584	Canola	cytosol	27.75	64.22
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	51.4	63.74
VIT_01s0137g00460.t01	Wine grape	nucleus	51.58	62.67
Bra032793.1-P	Field mustard	nucleus	44.51	62.57
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	49.72	62.53
Bra023465.1-P	Field mustard	cytosol, plastid	52.51	62.53
CDX85597	Canola	cytosol, plastid	52.51	62.53
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	49.72	62.38
CDX84957	Canola	cytosol	44.32	61.82
CDX91062	Canola	cytosol, plastid	51.96	61.73
KRG94356	Soybean	nucleus	48.79	61.22
TraesCS3D01G408900.1	Wheat	cytosol	52.33	60.3
GSMUA_Achr6P06710_001	Banana	nucleus	51.58	60.22
VIT_14s0066g00290.t01	Wine grape	mitochondrion	51.58	60.09
KRH43098	Soybean	endoplasmic reticulum, golgi	51.4	60.0
Solyc03g111870.2.1	Tomato	nucleus	48.6	59.73
Bra008758.1-P	Field mustard	nucleus	51.77	59.66
CDX69581	Canola	nucleus, plastid	51.77	59.66
AT5G14420.2	Thale cress	nucleus, plastid	51.96	59.62
CDX91935	Canola	cytosol	50.65	59.52
CDY09854	Canola	nucleus, plastid	51.58	59.44
Bra000997.1-P	Field mustard	nucleus	50.65	59.39
KRH59243	Soybean	endoplasmic reticulum, golgi	50.84	59.35
CDX70564	Canola	cytosol, plastid	51.96	59.24
CDX74310	Canola	cytosol	50.47	59.17
CDX78576	Canola	cytosol, plastid	51.77	59.02
Bra006253.1-P	Field mustard	nucleus, plastid	51.77	59.02
Bra039105.1-P	Field mustard	nucleus	50.09	58.99
CDY56212	Canola	plastid	48.23	58.73
Bra004260.1-P	Field mustard	plastid	48.23	58.73
CDY01855	Canola	cytosol, plastid	48.04	58.5
CDY49066	Canola	cytosol	50.09	58.48
CDY37509	Canola	cytosol	50.09	58.48
KRG97516	Soybean	golgi, plasma membrane	49.91	58.39
AT1G67800.2	Thale cress	plasma membrane	48.79	57.84
KRH31355	Soybean	golgi, plasma membrane	49.53	57.45
AT3G01650.2	Thale cress	cytosol	51.4	56.44
Solyc02g093520.2.1	Tomato	nucleus	51.4	56.1
KRH58251	Soybean	nucleus	51.21	56.01
KRG93947	Soybean	nucleus	51.58	55.85
TraesCS7D01G377600.1	Wheat	plastid	47.3	55.58
TraesCS7D01G305600.1	Wheat	mitochondrion	41.9	55.42
TraesCS7D01G377500.1	Wheat	plastid	46.55	55.07
PGSC0003DMT400032842	Potato	mitochondrion	49.35	54.53
TraesCS3D01G510000.1	Wheat	cytosol	34.64	54.07
TraesCS5D01G378400.2	Wheat	endoplasmic reticulum, extracellular	30.91	51.08
CDY27585	Canola	cytosol	11.36	46.92
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	30.54	45.3
AT1G24545.1	Thale cress	cytosol	14.71	43.41
TraesCS3D01G509900.2	Wheat	cytosol	36.87	41.34
PGSC0003DMT400039186	Potato	cytosol	48.23	26.98
TraesCS6D01G057900.2	Wheat	cytosol	17.69	16.1
TraesCS6D01G176800.1	Wheat	cytosol, nucleus, plastid	17.13	16.03
TraesCS1D01G236200.1	Wheat	cytosol	17.13	15.59

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	InterPro:Copine	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857
PANTHER:PTHR10857:SF68	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	SignalP:SignalP-TM	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS5D01G122000	EnsemblPlants:TraesCS5D01G122000.1	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	TIGR:cd16729
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:175775832..175787872

Molecular Weight (calculated)

58246.0 Da

IEP (calculated)

5.651

GRAVY (calculated)

-0.212

Length

537 amino acids

Sequence
(BLAST)

001: MSGFLAVAGK IVTFLLWVLF LVLQTATKVV GGLLQVAPPA EPQEEPQPEA APRPRSPPAA RNRAGGGPAD PYGPQSQLWD PPPPPHTAPV TDEYHSSSIY
101: RRRVSAPQAA EDLVVSSSSY SHSAVAAAPA SPAHAVSVPP VSRTIKTPAV ASKRPKLERK YSKIVDQYRS LDEVIEALAQ AGLESSNLII GIDFTKSNEW
201: TGKRSFNGVS LHHIGDAPNP YEQAISIIGQ TLSAFDEDNL IPCYGFGDAS THDQDVFAFN PDERPCYGFQ EALARYREIV PHLRLSGPTS FSPIIEMATT
301: IVEQSGGQYH VLVIIADGQV TRSVNTEFGQ LSTQEQMTVD AIVQASEFPL SIILVGVGDG PWDMMNEFDD NIPARSFDNF QFVNFTGIMS KKISQSNKET
401: EFALSALMEI PLQYKATLQL GILGRRLAKS PERVPLPPPF ASYNTTSRAA PSWANNFRSV PSNLREEATL DSTITPSVTP PPAADARASE LQFCPVCLAK
501: PRDMAFGCGH QTCSGCGPQV VDCPICRRPI DTRVKLY

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.