Factsheet for TraesCS3D01G510000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G503400.1	Wheat	cytosol	98.26	88.48
TraesCS3B01G566800.1	Wheat	cytosol	94.48	85.75
KXG34172	Sorghum	nucleus	84.88	75.45
Zm00001d011821_P007	Maize	cytosol	84.59	67.83
Zm00001d006136_P001	Maize	cytosol	18.6	65.98
HORVU3Hr1G110870.14	Barley	mitochondrion	89.24	64.36
GSMUA_Achr10P...	Banana	nucleus	70.64	63.61
CDX84471	Canola	cytosol, mitochondrion	61.63	58.4
Bra024254.1-P	Field mustard	mitochondrion	61.92	58.2
CDY43775	Canola	cytosol, mitochondrion	61.92	58.04
VIT_04s0044g01620.t01	Wine grape	cytosol	61.63	57.77
AT5G63970.1	Thale cress	cytosol	61.34	57.49
CDY31343	Canola	cytosol	61.34	57.49
CDY39835	Canola	cytosol	61.05	57.22
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	55.81	56.14
TraesCS3D01G509900.2	Wheat	cytosol	74.13	53.24
Solyc09g065870.2.1	Tomato	nucleus	63.66	52.14
KRH59596	Soybean	nucleus	62.5	50.47
KRH64018	Soybean	nucleus	61.63	49.07
TraesCS7D01G305600.1	Wheat	mitochondrion	51.74	43.84
TraesCS3D01G408900.1	Wheat	cytosol	55.81	41.2
GSMUA_Achr5P25940_001	Banana	cytosol	25.87	41.01
KRH40948	Soybean	nucleus	42.44	40.9
TraesCS7D01G377500.1	Wheat	plastid	53.78	40.75
TraesCS7D01G377600.1	Wheat	plastid	53.78	40.48
TraesCS5D01G378400.2	Wheat	endoplasmic reticulum, extracellular	37.21	39.38
KRH53919	Soybean	nucleus	40.41	37.07
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	54.07	34.64
TraesCS1D01G236200.1	Wheat	cytosol	22.09	12.88
TraesCS6D01G176800.1	Wheat	cytosol, nucleus, plastid	21.22	12.72
TraesCS6D01G057900.2	Wheat	cytosol	21.8	12.71

Protein Annotations

EnsemblPlants:TraesCS3D01G510000.1	EnsemblPlantsGene:TraesCS3D01G510000	Gene3D:3.30.40.10	InterPro:Copine	InterPro:IPR001841	InterPro:IPR013083
InterPro:IPR036465	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:vWFA_dom_sf	PANTHER:PTHR10857	PANTHER:PTHR10857:SF104
PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF53300
SUPFAM:SSF57850	TIGR:cd16729	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	:	:

Description

No Description!

Coordinates

chr3D:-:595070325..595073674

Molecular Weight (calculated)

37402.2 Da

IEP (calculated)

6.262

GRAVY (calculated)

-0.217

Length

344 amino acids

Sequence
(BLAST)

001: MWGERAHHRH GHHHDHVPSG GSRDRQPKFI ADNYSSVDEV IAALREAGLE SSNLILGIDF TKSNEWSGRH SFGRKSLHAI SGTPNPYEQA ISIIGRTLSP
101: FDDDNLIPCF GFGDGPTSFA PLIYAAMSVV ESSNCQYHVL VIIADGQVTT STSGGRLSPQ EQATIQAIVD ASFYPLSIVM VGVGDGPWDA MQHFDDCIPD
201: RAFDNFQFVN FTGLMSASKD ISKKEAAFAL AALMEIPTQY KATQGLRPPE RHAQNANPPR ILPPPSKVLE YDNIVAASHT PAATSQSTDI GYTVSDEKVC
301: PICLTNPKDM AFQCGHLTCK ECGPTLSTCP LCRAPITVRV RLFS

Best Arabidopsis Sequence Match ( AT1G67800.4 )
(BLAST)

001: MGGSSSKESP RGGGSGRRYE RSVSGSSSYS SAWDQSSYYQ TPNHPSASPV SSYNSGRQTP KNLERKYSRI ADNYRSIDEV TAALSHAGLE SSNLIVGIDV
101: TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM CYREIVPQLR LSGPTSFAPI
201: IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA RAFDNFQFVN FTDIMSKNID
301: PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST THNESQQQFC PVCLVSAKNM
401: AFNCGHQTCA GCGEDLHVCP ICRSSISVRI KLY

Arabidopsis Description

Copine (Calcium-dependent phospholipid-binding protein) family [Source:UniProtKB/TrEMBL;Acc:F4HTR6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.