Factsheet for TraesCS3D01G509900.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G503300.1	Wheat	cytosol	92.48	92.68
TraesCS3B01G566700.1	Wheat	cytosol	92.69	91.36
TraesCS3D01G510000.1	Wheat	cytosol	53.24	74.13
Os01t0960500-01	Rice	plasma membrane	56.99	70.54
GSMUA_Achr10P...	Banana	nucleus	48.64	60.99
VIT_04s0044g01620.t01	Wine grape	cytosol	44.26	57.77
CDX84471	Canola	cytosol, mitochondrion	43.22	57.02
HORVU3Hr1G110850.8	Barley	cytosol	41.34	56.9
Bra024254.1-P	Field mustard	mitochondrion	43.42	56.83
AT5G63970.1	Thale cress	cytosol	43.22	56.4
CDY43775	Canola	cytosol, mitochondrion	43.22	56.4
CDY31343	Canola	cytosol	43.01	56.13
CDY39835	Canola	cytosol	42.8	55.86
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	39.87	55.85
Solyc09g065870.2.1	Tomato	nucleus	47.39	54.05
KRH59596	Soybean	nucleus	46.35	52.11
KRH64018	Soybean	nucleus	46.14	51.16
GSMUA_Achr5P25940_001	Banana	cytosol	21.92	48.39
TraesCS7D01G305600.1	Wheat	mitochondrion	39.46	46.55
TraesCS5D01G378400.2	Wheat	endoplasmic reticulum, extracellular	30.27	44.62
KRH40948	Soybean	nucleus	31.73	42.58
TraesCS7D01G377500.1	Wheat	plastid	40.08	42.29
TraesCS3D01G408900.1	Wheat	cytosol	40.5	41.63
TraesCS7D01G377600.1	Wheat	plastid	38.62	40.48
KRH53919	Soybean	nucleus	29.85	38.13
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	41.34	36.87
TraesCS6D01G057900.2	Wheat	cytosol	17.12	13.9
TraesCS1D01G236200.1	Wheat	cytosol	16.7	13.56
TraesCS6D01G176800.1	Wheat	cytosol, nucleus, plastid	16.08	13.41

Protein Annotations

EnsemblPlants:TraesCS3D01G509900.2	EnsemblPlantsGene:TraesCS3D01G509900	Gene3D:3.30.40.10	InterPro:Copine	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR10857	PANTHER:PTHR10857:SF104	PFAM:PF07002	PFAM:PF13920
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16520	MapMan:19.2.2.1.5.3.2
MapMan:19.2.2.1.6.2	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:595062756..595066756

Molecular Weight (calculated)

53327.4 Da

IEP (calculated)

3.967

GRAVY (calculated)

-0.431

Length

479 amino acids

Sequence
(BLAST)

001: MWGWGKQEKA HDTKSSPGMW GWGEEEDEEE EAHDEHATRS WPITWGEEEE TDDEEDTRSP PTSWDENTDD EDVPSGSSED VPSGSSDDVP SWSSEEVPSG
101: SSEEGEPMYN YSTVDEVITA LREAGLESSN LIFGIDFTKS NDWSGQHSFG GESLHAISRT PNPYEQAISI IGRTLSPFDD DNLIPCFGFG DVSTCDHSVF
201: SFYKDYRPCC GFEEVLDRYK QMIPYLDLSG PTSFAPLIYA AISVVENSNY QHHVLVIIAD GQVATSKSYS IVSPQEEATI QALIDASFYP LSIVMVGVGD
301: GPWKEMQPAD ECIPARAFYN FQFVNFTDIM STSKDMAKKE AAFAFAALME IPTQYKAAQG LYPPEYSWHE EMADPWMILP PPIEVLERDD AVAATYAPAA
401: TFLPTDVGND ASVEQVCPIC LRNPRDMAFQ CGHLTCRECG PTLSTCPVCR VPITHEALLV KRVRPSEAED LPFHPIWYE

Best Arabidopsis Sequence Match ( AT1G67800.4 )
(BLAST)

001: MGGSSSKESP RGGGSGRRYE RSVSGSSSYS SAWDQSSYYQ TPNHPSASPV SSYNSGRQTP KNLERKYSRI ADNYRSIDEV TAALSHAGLE SSNLIVGIDV
101: TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM CYREIVPQLR LSGPTSFAPI
201: IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA RAFDNFQFVN FTDIMSKNID
301: PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST THNESQQQFC PVCLVSAKNM
401: AFNCGHQTCA GCGEDLHVCP ICRSSISVRI KLY

Arabidopsis Description

Copine (Calcium-dependent phospholipid-binding protein) family [Source:UniProtKB/TrEMBL;Acc:F4HTR6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.