Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr10P... | Banana | nucleus | 68.22 | 69.11 |
VIT_04s0044g01620.t01 | Wine grape | cytosol | 61.76 | 65.12 |
CDX84471 | Canola | cytosol, mitochondrion | 60.98 | 65.01 |
Bra024254.1-P | Field mustard | mitochondrion | 61.24 | 64.75 |
CDY43775 | Canola | cytosol, mitochondrion | 60.98 | 64.31 |
CDY31343 | Canola | cytosol | 60.21 | 63.49 |
CDY39835 | Canola | cytosol | 59.95 | 63.22 |
AT5G63970.1 | Thale cress | cytosol | 59.95 | 63.22 |
Bra031942.1-P | Field mustard | cytosol, mitochondrion, nucleus | 55.3 | 62.57 |
Solyc09g065870.2.1 | Tomato | nucleus | 63.05 | 58.1 |
TraesCS3A01G503300.1 | Wheat | cytosol | 71.58 | 57.95 |
KRH59596 | Soybean | nucleus | 63.05 | 57.28 |
TraesCS3D01G509900.2 | Wheat | cytosol | 70.54 | 56.99 |
KRH64018 | Soybean | nucleus | 62.02 | 55.56 |
TraesCS3B01G566700.1 | Wheat | cytosol | 69.25 | 55.14 |
Os08t0135400-01 | Rice | plasma membrane | 56.59 | 54.61 |
GSMUA_Achr5P25940_001 | Banana | cytosol | 29.97 | 53.46 |
HORVU3Hr1G110850.8 | Barley | cytosol | 47.8 | 53.16 |
Os08t0494300-01 | Rice | plasma membrane | 52.97 | 51.77 |
KRH40948 | Soybean | nucleus | 45.99 | 49.86 |
Os01t0908700-01 | Rice | plasma membrane, plastid | 55.81 | 48.43 |
Os06t0608800-02 | Rice | nucleus | 55.56 | 48.1 |
Os09t0565300-01 | Rice | cytosol | 11.63 | 46.88 |
KRH53919 | Soybean | nucleus | 40.57 | 41.87 |
Os12t0288400-01 | Rice | endoplasmic reticulum, extracellular, vacuole | 54.78 | 38.83 |
Os05t0373300-01 | Rice | plasma membrane | 21.96 | 14.26 |
Os02t0521300-01 | Rice | plasma membrane | 19.9 | 13.18 |
Os09t0565200-02 | Rice | extracellular | 3.88 | 4.66 |
Os09t0565350-00 | Rice | cytosol | 1.03 | 0.9 |
Protein Annotations
MapMan:19.2.2.1.5.3.2 | MapMan:19.2.2.1.6.2 | Gene3D:3.30.40.10 | EntrezGene:4325244 | EMBL:AK065423 | ProteinID:BAD87129.1 |
ProteinID:BAD87218.1 | ProteinID:BAF07381.1 | ProteinID:BAS76332.1 | InterPro:Copine | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0004842 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
GO:GO:0006464 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009611 | GO:GO:0009719 | GO:GO:0009867 | GO:GO:0009987 |
GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042742 | InterPro:IPR001841 | InterPro:IPR013083 |
InterPro:IPR036465 | EnsemblPlantsGene:Os01g0960500 | EnsemblPlants:Os01t0960500-01 | PFAM:PF07002 | PFAM:PF13920 | PFscan:PS50089 |
PANTHER:PTHR10857 | PANTHER:PTHR10857:SF104 | UniProt:Q5JMT9 | SMART:SM00184 | SUPFAM:SSF53300 | SUPFAM:SSF57850 |
UniParc:UPI00004C28AA | RefSeq:XP_015622215.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:vWFA_dom_sf | : |
Description
Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0960500-01)
Coordinates
chr1:-:42350945..42355276
Molecular Weight (calculated)
42616.3 Da
IEP (calculated)
6.312
GRAVY (calculated)
-0.318
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MWGDRTHHKH WNQAHVPSGT SKDKFQAKGQ PKFIPDNYSS VDEVTAALRD AGLESSNLIL GIDFTKSNEW SGRYSFGRKS LHAISATPNP YEQAISIIGR
101: TLSPFDDDNL IPCFGFGDAS THDQSVFSFY QDSRSCCGFE EVLERYRQIV PHLNLSGPTS FAPLIYAAIS VVENSNLQYH VLVIIADGQV TTSNTKDGKL
201: SPQEQATIQA IVDASYYPLS IVMVGVGDGP WDAMQHFDDC IPDRAFDNFQ FVNFTEIMST SKDMPKKEAA FALAALMEIP SQYKATQGLR PLEKHAGHVA
301: SHLRILPPPN KVLENDNAAA SRPPTASSQS TGFGKNTTDE QVCPICLTNP KDMAFQCGHL TCKECGPTLS TCPLCRVPIT MRVRLYS
101: TLSPFDDDNL IPCFGFGDAS THDQSVFSFY QDSRSCCGFE EVLERYRQIV PHLNLSGPTS FAPLIYAAIS VVENSNLQYH VLVIIADGQV TTSNTKDGKL
201: SPQEQATIQA IVDASYYPLS IVMVGVGDGP WDAMQHFDDC IPDRAFDNFQ FVNFTEIMST SKDMPKKEAA FALAALMEIP SQYKATQGLR PLEKHAGHVA
301: SHLRILPPPN KVLENDNAAA SRPPTASSQS TGFGKNTTDE QVCPICLTNP KDMAFQCGHL TCKECGPTLS TCPLCRVPIT MRVRLYS
001: MNMSNKRNQQ PSYIADHFSS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRYSFNRKS LHAIGKRQNP YEKAISIIGR TLSPFDEDDL IPCFGFGDVT
101: TRDQYVFSFY PENKSCDGLE NAVKRYREIV PHLKLSGPTS FAPVIDAAIN IVEQNNMQYH VLVIIADGQV TRNPDVPLGR LSPQEEATMN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHREFDNF QFVNFTKIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL NRKPVRSSHQ HHKPLPPPPE VIERDNAVRS
301: VPNQMTETAE KSDRLAPSTV PVCPICLTNP KDMAFSCGHT TCKECGVVIT TCPLCRQPIT TRIRLYT
101: TRDQYVFSFY PENKSCDGLE NAVKRYREIV PHLKLSGPTS FAPVIDAAIN IVEQNNMQYH VLVIIADGQV TRNPDVPLGR LSPQEEATMN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHREFDNF QFVNFTKIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL NRKPVRSSHQ HHKPLPPPPE VIERDNAVRS
301: VPNQMTETAE KSDRLAPSTV PVCPICLTNP KDMAFSCGHT TCKECGVVIT TCPLCRQPIT TRIRLYT
Arabidopsis Description
RGLG3E3 ubiquitin-protein ligase RGLG3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX26]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.