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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr10P... Banana nucleus 68.22 69.11
VIT_04s0044g01620.t01 Wine grape cytosol 61.76 65.12
CDX84471 Canola cytosol, mitochondrion 60.98 65.01
Bra024254.1-P Field mustard mitochondrion 61.24 64.75
CDY43775 Canola cytosol, mitochondrion 60.98 64.31
CDY31343 Canola cytosol 60.21 63.49
CDY39835 Canola cytosol 59.95 63.22
AT5G63970.1 Thale cress cytosol 59.95 63.22
Bra031942.1-P Field mustard cytosol, mitochondrion, nucleus 55.3 62.57
Solyc09g065870.2.1 Tomato nucleus 63.05 58.1
TraesCS3A01G503300.1 Wheat cytosol 71.58 57.95
KRH59596 Soybean nucleus 63.05 57.28
TraesCS3D01G509900.2 Wheat cytosol 70.54 56.99
KRH64018 Soybean nucleus 62.02 55.56
TraesCS3B01G566700.1 Wheat cytosol 69.25 55.14
Os08t0135400-01 Rice plasma membrane 56.59 54.61
GSMUA_Achr5P25940_001 Banana cytosol 29.97 53.46
HORVU3Hr1G110850.8 Barley cytosol 47.8 53.16
Os08t0494300-01 Rice plasma membrane 52.97 51.77
KRH40948 Soybean nucleus 45.99 49.86
Os01t0908700-01 Rice plasma membrane, plastid 55.81 48.43
Os06t0608800-02 Rice nucleus 55.56 48.1
Os09t0565300-01 Rice cytosol 11.63 46.88
KRH53919 Soybean nucleus 40.57 41.87
Os12t0288400-01 Rice endoplasmic reticulum, extracellular, vacuole 54.78 38.83
Os05t0373300-01 Rice plasma membrane 21.96 14.26
Os02t0521300-01 Rice plasma membrane 19.9 13.18
Os09t0565200-02 Rice extracellular 3.88 4.66
Os09t0565350-00 Rice cytosol 1.03 0.9
Protein Annotations
MapMan:19.2.2.1.5.3.2MapMan:19.2.2.1.6.2Gene3D:3.30.40.10EntrezGene:4325244EMBL:AK065423ProteinID:BAD87129.1
ProteinID:BAD87218.1ProteinID:BAF07381.1ProteinID:BAS76332.1InterPro:CopineGO:GO:0003674GO:GO:0003824
GO:GO:0004842GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737
GO:GO:0006464GO:GO:0006950GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152
GO:GO:0009605GO:GO:0009607GO:GO:0009611GO:GO:0009719GO:GO:0009867GO:GO:0009987
GO:GO:0016567GO:GO:0016740GO:GO:0019538GO:GO:0042742InterPro:IPR001841InterPro:IPR013083
InterPro:IPR036465EnsemblPlantsGene:Os01g0960500EnsemblPlants:Os01t0960500-01PFAM:PF07002PFAM:PF13920PFscan:PS50089
PANTHER:PTHR10857PANTHER:PTHR10857:SF104UniProt:Q5JMT9SMART:SM00184SUPFAM:SSF53300SUPFAM:SSF57850
UniParc:UPI00004C28AARefSeq:XP_015622215.1InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDInterPro:vWFA_dom_sf:
Description
Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0960500-01)
Coordinates
chr1:-:42350945..42355276
Molecular Weight (calculated)
42616.3 Da
IEP (calculated)
6.312
GRAVY (calculated)
-0.318
Length
387 amino acids
Sequence
(BLAST)
001: MWGDRTHHKH WNQAHVPSGT SKDKFQAKGQ PKFIPDNYSS VDEVTAALRD AGLESSNLIL GIDFTKSNEW SGRYSFGRKS LHAISATPNP YEQAISIIGR
101: TLSPFDDDNL IPCFGFGDAS THDQSVFSFY QDSRSCCGFE EVLERYRQIV PHLNLSGPTS FAPLIYAAIS VVENSNLQYH VLVIIADGQV TTSNTKDGKL
201: SPQEQATIQA IVDASYYPLS IVMVGVGDGP WDAMQHFDDC IPDRAFDNFQ FVNFTEIMST SKDMPKKEAA FALAALMEIP SQYKATQGLR PLEKHAGHVA
301: SHLRILPPPN KVLENDNAAA SRPPTASSQS TGFGKNTTDE QVCPICLTNP KDMAFQCGHL TCKECGPTLS TCPLCRVPIT MRVRLYS
Best Arabidopsis Sequence Match ( AT5G63970.2 )
(BLAST)
001: MNMSNKRNQQ PSYIADHFSS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRYSFNRKS LHAIGKRQNP YEKAISIIGR TLSPFDEDDL IPCFGFGDVT
101: TRDQYVFSFY PENKSCDGLE NAVKRYREIV PHLKLSGPTS FAPVIDAAIN IVEQNNMQYH VLVIIADGQV TRNPDVPLGR LSPQEEATMN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHREFDNF QFVNFTKIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL NRKPVRSSHQ HHKPLPPPPE VIERDNAVRS
301: VPNQMTETAE KSDRLAPSTV PVCPICLTNP KDMAFSCGHT TCKECGVVIT TCPLCRQPIT TRIRLYT
Arabidopsis Description
RGLG3E3 ubiquitin-protein ligase RGLG3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX26]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.