Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 2
- plasma membrane 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P20180_001 | Banana | cytosol, nucleus, plastid | 31.8 | 38.55 |
| GSMUA_Achr7P03440_001 | Banana | cytosol | 47.0 | 32.59 |
| CDX84471 | Canola | cytosol, mitochondrion | 53.46 | 31.96 |
| Bra031942.1-P | Field mustard | cytosol, mitochondrion, nucleus | 50.23 | 31.87 |
| Bra024254.1-P | Field mustard | mitochondrion | 53.0 | 31.42 |
| CDY43775 | Canola | cytosol, mitochondrion | 53.0 | 31.34 |
| GSMUA_Achr10P... | Banana | nucleus | 54.84 | 31.15 |
| VIT_04s0044g01620.t01 | Wine grape | cytosol | 52.53 | 31.06 |
| AT5G63970.1 | Thale cress | cytosol | 51.61 | 30.52 |
| CDY39835 | Canola | cytosol | 51.15 | 30.25 |
| TraesCS3A01G503400.1 | Wheat | cytosol | 53.0 | 30.1 |
| Solyc09g065870.2.1 | Tomato | nucleus | 58.06 | 30.0 |
| Os01t0960500-01 | Rice | plasma membrane | 53.46 | 29.97 |
| CDY31343 | Canola | cytosol | 50.69 | 29.97 |
| TraesCS3B01G566800.1 | Wheat | cytosol | 51.15 | 29.29 |
| KXG34172 | Sorghum | nucleus | 52.07 | 29.2 |
| KRH59596 | Soybean | nucleus | 56.68 | 28.87 |
| KRH64018 | Soybean | nucleus | 57.14 | 28.7 |
| GSMUA_Achr2P05470_001 | Banana | nucleus | 47.93 | 27.81 |
| GSMUA_Achr6P06710_001 | Banana | nucleus | 56.68 | 26.74 |
| GSMUA_Achr9P12830_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 49.31 | 26.16 |
| Zm00001d011821_P007 | Maize | cytosol | 51.15 | 25.87 |
| TraesCS3D01G510000.1 | Wheat | cytosol | 41.01 | 25.87 |
| KRH40948 | Soybean | nucleus | 42.4 | 25.77 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 47.93 | 25.0 |
| GSMUA_Achr8P01300_001 | Banana | nucleus | 49.31 | 24.65 |
| GSMUA_Achr9P29460_001 | Banana | nucleus | 52.53 | 24.36 |
| HORVU3Hr1G110870.14 | Barley | mitochondrion | 52.53 | 23.9 |
| TraesCS3A01G503300.1 | Wheat | cytosol | 48.39 | 21.97 |
| TraesCS3D01G509900.2 | Wheat | cytosol | 48.39 | 21.92 |
| TraesCS3B01G566700.1 | Wheat | cytosol | 47.47 | 21.19 |
| KRH53919 | Soybean | nucleus | 35.94 | 20.8 |
| GSMUA_Achr4P09310_001 | Banana | endoplasmic reticulum, golgi | 34.56 | 20.33 |
| HORVU3Hr1G110850.8 | Barley | cytosol | 23.04 | 14.37 |
| GSMUA_AchrUn_... | Banana | cytosol | 10.14 | 11.83 |
| GSMUA_AchrUn_... | Banana | cytosol, golgi, plastid | 20.28 | 10.05 |
| GSMUA_Achr5P08050_001 | Banana | cytosol | 24.42 | 8.92 |
| Zm00001d006136_P001 | Maize | cytosol | 3.23 | 7.22 |
| GSMUA_Achr5P25930_001 | Banana | extracellular | 6.45 | 5.91 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P25940_001 | EnsemblPlants:GSMUA_Achr5T25940_001 | EnsemblPlantsGene:GSMUA_Achr5G25940_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Copine | PANTHER:PTHR10857 | PANTHER:PTHR10857:SF104 | PFAM:PF07002 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002956F36 | UniProt:M0T1R9 | MapMan:19.2.2.1.5.3.2 | MapMan:19.2.2.1.6.2 | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G25940_001]
Coordinates
chr5:-:26908492..26911338
Molecular Weight (calculated)
24586.7 Da
IEP (calculated)
6.714
GRAVY (calculated)
-0.365
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNTNSAEGS SPRKYPLPST RNYAHPSSHR YPQQAHFTAG SSFNNKNQNK QQPAFIADNF SSLEEVISAL RDAGLESSNL ILGIDFTKSN DWTGRHSFNR
101: RSLHAIGDTT NPYEQAISII GRTLSPFDED NLIPCFGFGD ASTRDEFVFS FYPDHRPSHG FEEALSRYRE IVPRLTLSGY TLFILVSFFC ICWNSLFLGC
201: IVEFSLNELL FLHIKRQ
101: RSLHAIGDTT NPYEQAISII GRTLSPFDED NLIPCFGFGD ASTRDEFVFS FYPDHRPSHG FEEALSRYRE IVPRLTLSGY TLFILVSFFC ICWNSLFLGC
201: IVEFSLNELL FLHIKRQ
001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T
Arabidopsis Description
RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.