Factsheet for TraesCS3B01G566700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G503300.1	Wheat	cytosol	91.36	92.89
TraesCS3D01G509900.2	Wheat	cytosol	91.36	92.69
TraesCS3B01G566800.1	Wheat	cytosol	57.0	73.09
Os01t0960500-01	Rice	plasma membrane	55.14	69.25
GSMUA_Achr10P...	Banana	nucleus	47.12	59.95
VIT_04s0044g01620.t01	Wine grape	cytosol	42.59	56.4
HORVU3Hr1G110850.8	Barley	cytosol	40.33	56.32
CDX84471	Canola	cytosol, mitochondrion	41.77	55.92
Bra024254.1-P	Field mustard	mitochondrion	41.98	55.74
AT5G63970.1	Thale cress	cytosol	41.77	55.31
CDY43775	Canola	cytosol, mitochondrion	41.77	55.31
CDY31343	Canola	cytosol	41.56	55.04
CDY39835	Canola	cytosol	41.36	54.77
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	38.27	54.39
Solyc09g065870.2.1	Tomato	nucleus	45.47	52.62
KRH59596	Soybean	nucleus	45.06	51.41
KRH64018	Soybean	nucleus	45.27	50.93
GSMUA_Achr5P25940_001	Banana	cytosol	21.19	47.47
TraesCS7B01G134400.1	Wheat	cytosol	37.86	46.12
TraesCS5B01G371300.1	Wheat	endoplasmic reticulum, vacuole	30.04	46.06
TraesCS7B01G208900.1	Wheat	mitochondrion	36.83	42.62
TraesCS7B01G283100.1	Wheat	cytosol	38.68	42.44
TraesCS5B01G111900.1	Wheat	cytosol	20.99	42.32
KRH40948	Soybean	nucleus	30.86	42.02
TraesCS3B01G449200.1	Wheat	cytosol	39.3	40.9
TraesCS7B01G283200.1	Wheat	cytosol	38.27	40.79
KRH53919	Soybean	nucleus	29.01	37.6
TraesCS6B01G074300.2	Wheat	cytosol	16.46	13.56
TraesCS1B01G247700.2	Wheat	cytosol	15.84	13.05
TraesCS6B01G235200.1	Wheat	plastid	15.23	12.82

Protein Annotations

EnsemblPlants:TraesCS3B01G566700.1	EnsemblPlantsGene:TraesCS3B01G566700	Gene3D:3.30.40.10	InterPro:Copine	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR10857	PANTHER:PTHR10857:SF104	PFAM:PF07002	PFAM:PF13920
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2

Description

No Description!

Coordinates

chr3B:-:798493090..798498385

Molecular Weight (calculated)

53754.5 Da

IEP (calculated)

3.831

GRAVY (calculated)

-0.448

Length

486 amino acids

Sequence
(BLAST)

001: MWGWGKQEKA DDTQSSPGMW GWGEEEEEEE EAHDEHRTRS WPIVWGEEDE TDDEEDTRSP PTSWDENTDD EDVPSGSSED VPSGSSEDVP SGSSEDVSSG
101: SSEDVPSGSS EEEEPMYNYS TVDEVITALR EAGLESSNLI FGIDFTKSND WSGKHSFGGE SLHAISRTPN PYEQAISIIG RTLSPFDDDN LIQCFGFGDV
201: STCDHSVFSF YEDYRPCCGF EEVLDRYKQM IPYLDLSGPT SFAPLIYAAI SVVENSNYQH HVLVIIADGQ VATSKSYSIV SPQEEATIQA LIDASFYPLS
301: IVMVGVGDGP WDEMQPADEG IPARAFYNFQ FVNFTDIMST SKDMEKKEAA FAFAALMEIP TQYKAAQGLL PPEWHEEMAD PWMILPPPIE VLERDDAVAA
401: TYAPAATFQL TDVGNGALDE QVCPICLRNP RDMAFQCGHL TCRNCGPALS TCPVCCALIT HDALLVRRAP PSEAEDPPFH PIWYQE

Best Arabidopsis Sequence Match ( AT1G67800.4 )
(BLAST)

001: MGGSSSKESP RGGGSGRRYE RSVSGSSSYS SAWDQSSYYQ TPNHPSASPV SSYNSGRQTP KNLERKYSRI ADNYRSIDEV TAALSHAGLE SSNLIVGIDV
101: TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM CYREIVPQLR LSGPTSFAPI
201: IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA RAFDNFQFVN FTDIMSKNID
301: PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST THNESQQQFC PVCLVSAKNM
401: AFNCGHQTCA GCGEDLHVCP ICRSSISVRI KLY

Arabidopsis Description

Copine (Calcium-dependent phospholipid-binding protein) family [Source:UniProtKB/TrEMBL;Acc:F4HTR6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.