CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64018	Soybean	nucleus	61.6	53.47
CDX84471	Canola	cytosol, mitochondrion	45.6	47.11
CDY43775	Canola	cytosol, mitochondrion	45.87	46.87
Bra024254.1-P	Field mustard	mitochondrion	45.6	46.72
CDY31343	Canola	cytosol	45.33	46.32
VIT_04s0044g01620.t01	Wine grape	cytosol	45.33	46.32
KRH59596	Soybean	nucleus	52.53	46.24
CDY39835	Canola	cytosol	44.8	45.78
AT5G63970.1	Thale cress	cytosol	44.27	45.23
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	40.0	43.86
GSMUA_Achr10P...	Banana	nucleus	43.73	42.93
Solyc09g065870.2.1	Tomato	nucleus	47.73	42.62
KRH43661	Soybean	cytosol	37.6	41.96
KXG34172	Sorghum	nucleus	42.67	41.34
TraesCS3B01G566800.1	Wheat	cytosol	41.33	40.9
TraesCS3A01G503400.1	Wheat	cytosol	41.33	40.58
Os01t0960500-01	Rice	plasma membrane	41.87	40.57
GSMUA_Achr5P25930_001	Banana	extracellular	25.6	40.51
TraesCS3D01G510000.1	Wheat	cytosol	37.07	40.41
Zm00001d006136_P001	Maize	cytosol	10.4	40.21
KRH07102	Soybean	cytosol	14.4	38.57
KRG94356	Soybean	nucleus	43.73	38.32
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	43.47	38.08
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	43.2	37.94
KRH07106	Soybean	cytosol, plastid	29.07	37.46
Zm00001d011821_P007	Maize	cytosol	42.4	37.06
KRH40948	Soybean	nucleus	34.67	36.41
GSMUA_Achr5P25940_001	Banana	cytosol	20.8	35.94
KRH13149	Soybean	cytosol, plastid	39.73	35.73
KRH59243	Soybean	endoplasmic reticulum, golgi	43.73	35.65
KRH58251	Soybean	nucleus	46.4	35.44
KRH43098	Soybean	endoplasmic reticulum, golgi	42.93	35.0
KRG93947	Soybean	nucleus	45.6	34.48
KRG97516	Soybean	golgi, plasma membrane	42.13	34.42
KRH44829	Soybean	nucleus, plastid	38.93	34.35
KRH31355	Soybean	golgi, plasma membrane	42.13	34.13
HORVU3Hr1G110850.8	Barley	cytosol	30.13	32.47
TraesCS3A01G503300.1	Wheat	cytosol	38.93	30.54
HORVU3Hr1G110870.14	Barley	mitochondrion	38.4	30.19
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	29.07	30.11
TraesCS3D01G509900.2	Wheat	cytosol	38.13	29.85
TraesCS3B01G566700.1	Wheat	cytosol	37.6	29.01
KRH20017	Soybean	cytosol	14.93	20.51
KRH54085	Soybean	cytosol	16.53	10.73
KRG96891	Soybean	cytosol	16.8	10.61
KRH41052	Soybean	endoplasmic reticulum	16.27	10.52
KRH68625	Soybean	cytosol	16.53	10.49
KRH68626	Soybean	cytosol	16.0	10.34
KRH44837	Soybean	extracellular, golgi	14.13	10.27
KRH13085	Soybean	extracellular, vacuole	14.13	10.15
KRH63871	Soybean	cytosol	16.8	10.13
KRH13151	Soybean	nucleus, vacuole	13.87	9.74
KRH44834	Soybean	plasma membrane	12.53	9.59

Protein Annotations

EMBL:ACUP02003489	EnsemblPlants:KRH53919	EnsemblPlantsGene:GLYMA_06G155100	Gene3D:3.30.40.10	InterPro:Copine	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR10857	PANTHER:PTHR10857:SF104	PFAM:PF07002
PFAM:PF13920	PFscan:PS50089	ProteinID:KRH53919	ProteinID:KRH53919.1	SEG:seg	SUPFAM:SSF57850
UniParc:UPI000295C9BA	UniProt:K7KV85	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:12674740..12678940

Molecular Weight (calculated)

42711.3 Da

IEP (calculated)

6.856

GRAVY (calculated)

-0.441

Length

375 amino acids

Sequence
(BLAST)

001: MYESQDNFYQ HPPSYNNSYH QPSPYAENSE NNTYHEPSSY AGTSSNTSYY QPSTHPGSKH SFHRKSLHHI GNIPNPYEQA ISIIGHTLSS FDEDNLIPCF
101: GFGDDNRFCH GFEEVLARYR EIGPYIKLSE LFDSRCFRIY FLYRLSNFLF QVFSVNFENF FFIRLAKAPS KVMIFAWMVV TRNPDVPRGK LSPQAQATIS
201: SIAAASHYPL SIILVGVGDG PWDEMKHFDD NISERLFDNF QYRVFKMSIN TGNFSAAALM EIPFQYRAAQ NIQLNDRESV LHQHKRPFPP PNEAIDHDNA
301: RMAIPHMTNL ESAEPTAPAA VEPVCPICLT NPKDMASGCG HTTCKECGST LSSCSMCRQQ ITTPPRLYTW VRKLI

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.