Factsheet for Solyc09g065870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0044g01620.t01	Wine grape	cytosol	65.0	74.39
CDX84471	Canola	cytosol, mitochondrion	62.38	72.18
AT5G63970.1	Thale cress	cytosol	62.38	71.39
CDY43775	Canola	cytosol, mitochondrion	62.14	71.12
Bra024254.1-P	Field mustard	mitochondrion	61.9	71.04
CDY31343	Canola	cytosol	61.67	70.57
CDY39835	Canola	cytosol	61.67	70.57
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	56.67	69.59
GSMUA_Achr10P...	Banana	nucleus	60.0	65.97
KRH64018	Soybean	nucleus	67.14	65.28
KRH59596	Soybean	nucleus	66.19	65.26
TraesCS3A01G503400.1	Wheat	cytosol	58.57	64.4
TraesCS3B01G566800.1	Wheat	cytosol	58.1	64.38
TraesCS3D01G510000.1	Wheat	cytosol	52.14	63.66
KXG34172	Sorghum	nucleus	58.57	63.57
Os01t0960500-01	Rice	plasma membrane	58.1	63.05
GSMUA_Achr5P25930_001	Banana	extracellular	35.0	62.03
GSMUA_Achr5P25940_001	Banana	cytosol	30.0	58.06
Zm00001d011821_P007	Maize	cytosol	56.9	55.71
Zm00001d006136_P001	Maize	cytosol	12.62	54.64
KRH40948	Soybean	nucleus	44.29	52.1
Solyc03g111870.2.1	Tomato	nucleus	52.86	50.8
Solyc05g053870.2.1	Tomato	plastid	54.29	50.55
HORVU3Hr1G110870.14	Barley	mitochondrion	55.24	48.64
Solyc02g093520.2.1	Tomato	nucleus	56.43	48.17
TraesCS3A01G503300.1	Wheat	cytosol	54.76	48.12
KRH53919	Soybean	nucleus	42.62	47.73
TraesCS3D01G509900.2	Wheat	cytosol	54.05	47.39
HORVU3Hr1G110850.8	Barley	cytosol	38.81	46.84
TraesCS3B01G566700.1	Wheat	cytosol	52.62	45.47
Solyc10g045520.1.1	Tomato	cytosol	7.86	23.74
Solyc10g045500.1.1	Tomato	cytosol	7.14	23.44
Solyc06g068840.2.1	Tomato	cytosol	20.95	15.25
Solyc03g118200.2.1	Tomato	cytosol	19.76	14.31

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	InterPro:Copine	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	UniProt:K4CUL3	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089
PANTHER:PTHR10857	PANTHER:PTHR10857:SF104	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
EnsemblPlantsGene:Solyc09g065870.2	EnsemblPlants:Solyc09g065870.2.1	UniParc:UPI000276CB36	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

No Description!

Coordinates

chr9:+:64141622..64149128

Molecular Weight (calculated)

46837.8 Da

IEP (calculated)

5.955

GRAVY (calculated)

-0.474

Length

420 amino acids

Sequence
(BLAST)

001: MGNQESALND AHSDHYHHSP ERVRNHIGSN PQYHPTTYAE SSMDSNYQAQ VTSYTGGSDR ANYQRNQQAS YIADNFKSLD EVVTALREAG LESSNLILGI
101: DFTKSNEWTG KSSFNRRSLH SVGHTANPYE QAISIIGRTL SPFDEDNLIP CFGFGDATTH DQHVFSFYPD HRPCDGFEEA LTRYKEIVPY LKLSGPTSFA
201: PIVNAAIDIV EANNGQYHVL VIIADGQVTR SLDTPHGSLS PQEQATVNSI VAASEYPLSI ILVGVGDGPW DEMKRFDDNI PQRAFDNFQF VNFTKIMSER
301: SEMAKKETAF ALAALMEIPF QYRATQRLRF RESNRGPRTR PLPPPREVID HDVAVKSVPH VTSYEPVDSG AAEQVCPICL TNPKDMAFGC GHLTCKECGA
401: TIQLCPLCRE PIKTRIRLYS

Best Arabidopsis Sequence Match ( AT5G63970.2 )
(BLAST)

001: MNMSNKRNQQ PSYIADHFSS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRYSFNRKS LHAIGKRQNP YEKAISIIGR TLSPFDEDDL IPCFGFGDVT
101: TRDQYVFSFY PENKSCDGLE NAVKRYREIV PHLKLSGPTS FAPVIDAAIN IVEQNNMQYH VLVIIADGQV TRNPDVPLGR LSPQEEATMN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHREFDNF QFVNFTKIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL NRKPVRSSHQ HHKPLPPPPE VIERDNAVRS
301: VPNQMTETAE KSDRLAPSTV PVCPICLTNP KDMAFSCGHT TCKECGVVIT TCPLCRQPIT TRIRLYT

Arabidopsis Description

RGLG3E3 ubiquitin-protein ligase RGLG3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.