Factsheet for Solyc05g053870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040712	Potato	nucleus, plastid	94.68	88.22
KRH43661	Soybean	cytosol	56.1	75.3
VIT_19s0085g01000.t01	Wine grape	extracellular	60.31	70.65
CDX67997	Canola	cytosol	56.98	67.99
CDX79314	Canola	cytosol, plastid	56.54	67.28
CDX87387	Canola	plastid	59.2	66.42
CDX88533	Canola	plastid	59.2	66.25
GSMUA_Achr7P03440_001	Banana	cytosol	45.9	66.13
Bra035112.1-P	Field mustard	plastid	58.76	65.92
KRH13149	Soybean	cytosol, plastid	59.42	64.27
TraesCS7A01G308900.1	Wheat	mitochondrion	56.98	64.09
Os08t0135400-01	Rice	plasma membrane	56.76	63.84
KRH44829	Soybean	nucleus, plastid	59.87	63.53
CDX99619	Canola	cytosol	9.53	63.24
GSMUA_AchrUn_...	Banana	mitochondrion	58.31	63.22
AT1G79380.1	Thale cress	mitochondrion	56.1	63.09
TraesCS7D01G305600.1	Wheat	mitochondrion	56.54	62.81
CDY50776	Canola	cytosol	10.2	62.16
Zm00001d035211_P001	Maize	mitochondrion	55.21	61.63
EES13310	Sorghum	mitochondrion	54.77	60.54
TraesCS7B01G208900.1	Wheat	mitochondrion	54.55	58.57
Solyc09g065870.2.1	Tomato	nucleus	50.55	54.29
Solyc03g111870.2.1	Tomato	nucleus	48.56	50.11
Solyc02g093520.2.1	Tomato	nucleus	51.66	47.36
Solyc10g045520.1.1	Tomato	cytosol	7.76	25.18
Solyc10g045500.1.1	Tomato	cytosol	6.43	22.66
Solyc06g068840.2.1	Tomato	cytosol	19.29	15.08
Solyc03g118200.2.1	Tomato	cytosol	18.63	14.48

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	InterPro:Copine	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	UniProt:K4C266	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089
PANTHER:PTHR10857	PANTHER:PTHR10857:SF47	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
EnsemblPlantsGene:Solyc05g053870.2	EnsemblPlants:Solyc05g053870.2.1	UniParc:UPI0002766708	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

No Description!

Coordinates

chr5:-:63904520..63910062

Molecular Weight (calculated)

49583.3 Da

IEP (calculated)

8.240

GRAVY (calculated)

-0.525

Length

451 amino acids

Sequence
(BLAST)

001: MGNTFRSTFH KKTSRSSSSD CNSSRGSTSR EISSFPSSFN ENFSSIPAKD LSFGSGSVNS KKDSSNCSEK EPGSVNLKKD SSNCSKKETE KTMKDKKNKY
101: YYIPDNFKSV DQVTLALRES GLESSNLIIG IDFTKSNEWT GKVSFNNKSL HAIGNSVNPY EKAISIIGKT LSPFDEDNLI PCFGFGDATT HDQDVFSFHS
201: DHSPCHGFEE VLACYKKIVP NLQLSGPTSY GPVVDAAVDI VERSGGQYHV LVIIADGQVT RSVNTSDSEL SEQEENTIKS IVTASMYPLS IVLVGVGDGP
301: WEDMQKFDDR IPAREFDNFQ FVNFTAIMKK NTSDSGKEAA FALAALMEIP IQYKAARELG LLGKRTGKAK KVVPKPPPVP YSRRMATPTR HQSSFSGSPQ
401: NEQNQACPVC LTGTKDMAFG CGHMTCRECG PRVSDCPICR RRITSRIRLY T

Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)

001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T

Arabidopsis Description

RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.