Factsheet for Solyc03g118200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g091590.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07300.1	Solyc01g091590.2.1	AT2G45760.1	17631528

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g068840.2.1	Tomato	cytosol	80.0	80.42
VIT_17s0000g00210.t01	Wine grape	cytosol	74.66	75.17
KRH41052	Soybean	endoplasmic reticulum	74.48	74.48
CDX98983	Canola	cytosol, plastid	30.86	73.06
AT5G61900.3	Thale cress	cytosol	71.38	71.63
CDY00235	Canola	cytosol	71.21	71.21
Bra010041.1-P	Field mustard	cytosol	71.21	71.21
KRH54085	Soybean	cytosol	70.69	70.93
Bra029301.1-P	Field mustard	cytosol, plastid	70.69	70.57
CDX86951	Canola	cytosol	70.34	70.34
GSMUA_AchrUn_...	Banana	cytosol, golgi, plastid	52.93	70.09
KRH20017	Soybean	cytosol	32.93	69.96
CDX98984	Canola	cytosol	69.66	68.82
CDX70026	Canola	cytosol	68.97	67.91
Bra009273.1-P	Field mustard	cytosol	68.79	67.74
AT5G07300.1	Thale cress	cytosol	68.1	67.41
CDX78287	Canola	cytosol	68.1	67.29
Bra005931.1-P	Field mustard	cytosol	68.1	67.29
CDX81044	Canola	cytosol	67.93	67.12
KRH63871	Soybean	cytosol	70.34	65.59
Os02t0521300-01	Rice	plasma membrane	62.24	61.82
KXG30293	Sorghum	cytosol	60.52	60.73
Zm00001d016615_P002	Maize	plasma membrane	56.38	60.11
TraesCS6D01G176800.1	Wheat	cytosol, nucleus, plastid	59.48	60.1
TraesCS6A01G189800.1	Wheat	cytosol	59.31	59.93
TraesCS6B01G235200.1	Wheat	plastid	59.14	59.45
Solyc10g045500.1.1	Tomato	cytosol	12.76	57.81
HORVU6Hr1G041140.14	Barley	mitochondrion	60.0	54.04
Solyc10g045520.1.1	Tomato	cytosol	12.41	51.8
AT5G61910.4	Thale cress	cytosol	71.38	30.76
Solyc03g111870.2.1	Tomato	nucleus	16.72	22.2
Solyc09g065870.2.1	Tomato	nucleus	14.31	19.76
Solyc02g093520.2.1	Tomato	nucleus	16.72	19.72
Solyc05g053870.2.1	Tomato	plastid	14.48	18.63

Protein Annotations

Gene3D:2.60.40.150	MapMan:27.2.7	Gene3D:3.40.50.410	InterPro:BONZAI	InterPro:C2B_Copine	InterPro:C2_dom
InterPro:C2_domain_sf	InterPro:Copine	GO:GO:0003674	GO:GO:0005488	GO:GO:0005544	GO:GO:0008150
GO:GO:0008219	GO:GO:0008289	GO:GO:0009987	GO:GO:0060548	InterPro:IPR000008	InterPro:IPR002035
InterPro:IPR035892	InterPro:IPR036465	UniProt:K4BLX1	PFAM:PF00168	PFAM:PF07002	PFscan:PS50004
PANTHER:PTHR10857	PANTHER:PTHR10857:SF108	SMART:SM00239	SMART:SM00327	SUPFAM:SSF49562	SUPFAM:SSF53300
EnsemblPlantsGene:Solyc03g118200.2	EnsemblPlants:Solyc03g118200.2.1	UniParc:UPI0002767C28	InterPro:VWF_A	SEG:seg	InterPro:vWFA_dom_sf

Description

No Description!

Coordinates

chr3:-:67135156..67145536

Molecular Weight (calculated)

64059.6 Da

IEP (calculated)

5.095

GRAVY (calculated)

-0.157

Length

580 amino acids

Sequence
(BLAST)

001: MGNCCSDVAG GQTAVGGTGV NQGNQPNAPN EAVDAFLKSR GYQGLYSQIE LSLSATSLRD RDVLSKSDPM AVLYSKEKDG SLKELTRTEV VLNSLNPKWI
101: TKYTMAYYFE TVQNLVFRVY DIDTQFHNQD VKMLKLEEQD FLGEASCTLA QIVTKSDRSL TMDLVCGEQF SGQAHARKFG KLTIFAEESI SSKTTVELKL
201: RCSELESKDL FSKSDPFLVV SKTTESGIVV PICKTEVMKN DHSPTWKPVF LKIQQIGSKE NPLIIECYDF NSNGKHSLIG KIQKSLLDLE KLHSAGTGAN
301: LFIPTAMGPK QENKVLKSQL FVESYSEKIQ YTFLDYLAFG YELNFMVAID FTASNGNPRL PDSLHYIDPS GRPNAYQRAI LDVGEVLQFY DSDKRFPAWG
401: FGARPIDGPV SHCFNLNGSS TYCEVEGIQG IMMAYISALH NVSLAGPTLF GPVITSAAHI ASQSLTNNER KYFVLLIITD GVITDLQETK DALVQAADLP
501: LSILIVGVGG ADFKEMEILD ADKGERLEST TGRVAVRDIV QFVPLRDVQN GDVSVVQSLL AELPSQLLEY MRSRKIQPTL

Best Arabidopsis Sequence Match ( AT5G61910.4 )
(BLAST)

0001: METEMDFSDG EQTNGNSHVT ASQYFAPPGY NRSLVAAYGN GNTTIGLEKG IERRLDHHEQ LPGYIFMCNG RTKTDCYRYR VFGIPRGGKD VVESIKPGMK
0101: LFLYDFEKRL LYGVYEATVG GRLDIEPEAF EGKYPAQVGF RIVMNCLPLT ENTFKSAIYE NYKGSKFKQE LSPHQVMSLL SLFRSFTSPE LDLLPHRLAS
0201: RASAPRTLSF EERFIAATHL RNASSVLDPL SARHVEPRLG SVMAHQPVPR TSLLQHSYFR QDDYTTPPRE SLSNLNQPYY PTEARQLRLL GDPSRSDSPR
0301: SEPPRSSIQD PQLKYLTILS NIRRYGSASD RLASENEYHP ATPSEKDQFA VPYSDNKNYP STLSGSEHPS ASAANGSVYR SEFYNSASQK EGEASQQHEI
0401: PAGTYHHPEA STVSNTTKSM QPDMQAVSVA QSHTETAGYP TPAHGEASQP PAGAIGYTHQ PQSVAGNYST HSQPGNVEES TQSYAGTDSY SQQQYYAAMG
0501: PTTQLHAGGY IQKPHEIGYS QQPHDAATGY SQQPHDAATG YSQQPHDAAT GYSQQPHAAS TGYSQQTYAA ATGYTQQPHA AAAGYTQQPH AAATGYSQQP
0601: HAAATAHAQQ PYAAATAHAQ QLHAVATGYA LQLHAAATGY AQQPHAAATG YALQPHAQAV EYTMQPHAQA VGYMPQYHAH AVEIGMQCIS LITLRQQMQP
0701: QRIIKHLKTL KQSVATLDLR NLCVMGAEAW TRTGALSGKE GQGHKTRVSS SVYCTFESAV FFVGKSKIMG NCCSDVASGA GATAGVGGSG SSAALGATND
0801: ALDYYLKSKG FNGLFSQIEL SFSASNLRDR DVLSKSDPMV VVYQKEKDAT LSEVFRSEVV LNSLAPKWIK KFIVAYHFET VQTLVFRVYD VDTKFQNSRE
0901: EMLKLDEQQF LGEATCALSE IITKSTRTST LELKRKDGFA PQAQPHHGKL IIHAEESLAS KISTEIVFRC SNLESKDLFS KSDPFLVVSK IVEHGTPIPV
1001: SKTEVRKNDL NPIWKPVFLS VQQVGSKDSP VIIECSDFNS NGKHSLIGKV QKSLSDLEKL HLAGQGINFS LPTGAGQNKV LKSQLFVDKF TETVHHTFLE
1101: YLASGFELNF MVAIDFTASN GNPRLPDSLH YIDPSGRLNA YQRAIMDVGE VLQFYDSDKR FPAWGFGARP IDAPVSHCFN LNGSSSYSEV DGIQGIMTSY
1201: TSALFNVSLA GPTLFGPVIN AAAMIASASL AQGSRKYYVL LIITDGVITD LQETKDALVS ASDLPLSILI VGVGGADFKE MEILDADKGE RLESSSGRLA
1301: SRDIVQFVAL RDVQYGEISV VQALLAELPS QFLTYMRIRN MKPIPP

Arabidopsis Description

DCD (Development and Cell Death) domain protein [Source:UniProtKB/TrEMBL;Acc:F4K518]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.