CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00634
KRH00635
KRH28237
KRH48228
KRH48229
KRH48230
KRH48231
KRH48232
KRH48233
KRH65133
KRH65134
KRH65135
KRH65136
KRH65137
KRH65138
KRH65139
KRH77255

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07300.1	KRH00634	AT2G45760.1	17631528
AT5G07300.1	KRH00635	AT2G45760.1	17631528
AT5G07300.1	KRH28237	AT2G45760.1	17631528
AT5G07300.1	KRH48228	AT2G45760.1	17631528
AT5G07300.1	KRH48229	AT2G45760.1	17631528
AT5G07300.1	KRH48230	AT2G45760.1	17631528
AT5G07300.1	KRH48231	AT2G45760.1	17631528
AT5G07300.1	KRH48232	AT2G45760.1	17631528
AT5G07300.1	KRH48233	AT2G45760.1	17631528
AT5G07300.1	KRH65133	AT2G45760.1	17631528
AT5G07300.1	KRH65134	AT2G45760.1	17631528
AT5G07300.1	KRH65135	AT2G45760.1	17631528
AT5G07300.1	KRH65136	AT2G45760.1	17631528
AT5G07300.1	KRH65137	AT2G45760.1	17631528
AT5G07300.1	KRH65138	AT2G45760.1	17631528
AT5G07300.1	KRH65139	AT2G45760.1	17631528
AT5G07300.1	KRH77255	AT2G45760.1	17631528

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63871	Soybean	cytosol	93.77	87.14
KRH41052	Soybean	endoplasmic reticulum	82.35	82.07
KRH20017	Soybean	cytosol	38.06	80.59
VIT_17s0000g00210.t01	Wine grape	cytosol	76.47	76.74
CDX98983	Canola	cytosol, plastid	30.28	71.43
Solyc03g118200.2.1	Tomato	cytosol	70.93	70.69
CDY00235	Canola	cytosol	69.38	69.14
Bra010041.1-P	Field mustard	cytosol	69.38	69.14
AT5G61900.3	Thale cress	cytosol	69.03	69.03
CDX86951	Canola	cytosol	69.2	68.97
Bra029301.1-P	Field mustard	cytosol, plastid	68.51	68.16
Solyc06g068840.2.1	Tomato	cytosol	66.95	67.07
GSMUA_AchrUn_...	Banana	cytosol, golgi, plastid	50.52	66.67
CDX98984	Canola	cytosol	67.47	66.44
CDX78287	Canola	cytosol	67.3	66.27
Bra005931.1-P	Field mustard	cytosol	67.3	66.27
CDX70026	Canola	cytosol	67.3	66.04
AT5G07300.1	Thale cress	cytosol	66.95	66.04
CDX81044	Canola	cytosol	66.95	65.93
Bra009273.1-P	Field mustard	cytosol	67.13	65.87
Os02t0521300-01	Rice	plasma membrane	62.11	61.47
TraesCS6B01G235200.1	Wheat	plastid	60.9	61.01
TraesCS6D01G176800.1	Wheat	cytosol, nucleus, plastid	60.55	60.98
TraesCS6A01G189800.1	Wheat	cytosol	60.38	60.8
KXG30293	Sorghum	cytosol	60.21	60.21
Zm00001d016615_P002	Maize	plasma membrane	56.4	59.93
KRH68625	Soybean	cytosol	58.3	57.02
KRG96891	Soybean	cytosol	57.61	56.06
KRH68626	Soybean	cytosol	56.23	56.03
HORVU6Hr1G041140.14	Barley	mitochondrion	60.21	54.04
KRH07106	Soybean	cytosol, plastid	15.57	30.93
AT5G61910.4	Thale cress	cytosol	69.03	29.64
KRG94356	Soybean	nucleus	17.99	24.3
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	16.78	22.72
KRH43661	Soybean	cytosol	12.98	22.32
KRG97516	Soybean	golgi, plasma membrane	17.65	22.22
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	16.44	22.2
KRH59596	Soybean	nucleus	16.09	21.83
KRH31355	Soybean	golgi, plasma membrane	17.47	21.81
KRH64018	Soybean	nucleus	16.26	21.76
KRH59243	Soybean	endoplasmic reticulum, golgi	17.13	21.52
KRH43098	Soybean	endoplasmic reticulum, golgi	16.95	21.3
KRH58251	Soybean	nucleus	17.82	20.98
KRH13149	Soybean	cytosol, plastid	14.88	20.62
KRG93947	Soybean	nucleus	17.65	20.56
KRH44829	Soybean	nucleus, plastid	15.05	20.47
KRH40948	Soybean	nucleus	12.28	19.89
KRH53919	Soybean	nucleus	10.73	16.53
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	9.86	15.75
KRH13085	Soybean	extracellular, vacuole	9.52	10.54
KRH44837	Soybean	extracellular, golgi	9.17	10.27
KRH13151	Soybean	nucleus, vacuole	9.34	10.11
KRH44834	Soybean	plasma membrane	8.48	10.0
KRH07102	Soybean	cytosol	2.25	9.29

Protein Annotations

EntrezGene:100799074	Gene3D:2.60.40.150	MapMan:27.2.7	EMBL:ACUP02003492	InterPro:BONZAI	InterPro:C2B_Copine
InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:Copine	EnsemblPlantsGene:GLYMA_06G163800	GO:GO:0003674	GO:GO:0005488
GO:GO:0005544	GO:GO:0008150	GO:GO:0008219	GO:GO:0008289	GO:GO:0009987	GO:GO:0060548
UniProt:I1KBX0	InterPro:IPR000008	InterPro:IPR002035	InterPro:IPR035892	InterPro:IPR036465	EnsemblPlants:KRH54085
ProteinID:KRH54085	ProteinID:KRH54085.1	ProteinID:KRH54086.1	PFAM:PF00168	PFAM:PF07002	PFscan:PS50004
PFscan:PS50234	PANTHER:PTHR10857	PANTHER:PTHR10857:SF108	SMART:SM00239	SMART:SM00327	SUPFAM:SSF49562
SUPFAM:SSF53300	UniParc:UPI000233A5EB	InterPro:VWF_A	SEG:seg	InterPro:vWFA_dom_sf	:

Description

hypothetical protein

Coordinates

chr6:-:13534327..13542414

Molecular Weight (calculated)

63789.9 Da

IEP (calculated)

5.067

GRAVY (calculated)

-0.074

Length

578 amino acids

Sequence
(BLAST)

001: MGNCFSEVAA GRAAIGGTAR DFHNLAGAPN DAVDNFLRSH GHHGLFSQIE LSFSASGLRD RDLLFKSNPM MVLYARGKNG ALEELRRTEV VLNSSSPTWI
101: TKHTLIYHFE VVQALVFRVY DVDTQFHNVD IKMLELDEQQ FLGEATCVLS QIITQPDKSL TIDLHTEDSI GSTLSKNSGK LMVHSEECIS SKTAIEMAFR
201: CSDLEYKDLF SRNDPFLLIS KVVEGSAQIP ICKTEVIRND LNPIWKLVFV NIQQVGSKDS PLVVECYNFN SNGKHDLMGK VQRSLAELEN IHNNGQGENL
301: FLPSADGQNH DNKVLKSQLF VDKFTESVQY TFLDYLAGGF ELNFMVAVDF TASNGNPRLP DSLHYIDPSG RPNAYQRAIV EVGEVLQFYD SDKRFPTWGF
401: GARPIDGPVS HCFNLNGSSH YCEVEGIQGI MMAYTSALLN VSLAGPTLFG PVISTAALIA SQSVANGGRK YFVLLIITDG VVTDLQETKD AIVKASDLPL
501: SILIVGVGGA DFKEMEVLDA DKGERLESSY GRVASRDIVQ FVPFRELQSG FSVVQALLAE LPAQFLTYVR SRNIQPSL

Best Arabidopsis Sequence Match ( AT5G61910.4 )
(BLAST)

0001: METEMDFSDG EQTNGNSHVT ASQYFAPPGY NRSLVAAYGN GNTTIGLEKG IERRLDHHEQ LPGYIFMCNG RTKTDCYRYR VFGIPRGGKD VVESIKPGMK
0101: LFLYDFEKRL LYGVYEATVG GRLDIEPEAF EGKYPAQVGF RIVMNCLPLT ENTFKSAIYE NYKGSKFKQE LSPHQVMSLL SLFRSFTSPE LDLLPHRLAS
0201: RASAPRTLSF EERFIAATHL RNASSVLDPL SARHVEPRLG SVMAHQPVPR TSLLQHSYFR QDDYTTPPRE SLSNLNQPYY PTEARQLRLL GDPSRSDSPR
0301: SEPPRSSIQD PQLKYLTILS NIRRYGSASD RLASENEYHP ATPSEKDQFA VPYSDNKNYP STLSGSEHPS ASAANGSVYR SEFYNSASQK EGEASQQHEI
0401: PAGTYHHPEA STVSNTTKSM QPDMQAVSVA QSHTETAGYP TPAHGEASQP PAGAIGYTHQ PQSVAGNYST HSQPGNVEES TQSYAGTDSY SQQQYYAAMG
0501: PTTQLHAGGY IQKPHEIGYS QQPHDAATGY SQQPHDAATG YSQQPHDAAT GYSQQPHAAS TGYSQQTYAA ATGYTQQPHA AAAGYTQQPH AAATGYSQQP
0601: HAAATAHAQQ PYAAATAHAQ QLHAVATGYA LQLHAAATGY AQQPHAAATG YALQPHAQAV EYTMQPHAQA VGYMPQYHAH AVEIGMQCIS LITLRQQMQP
0701: QRIIKHLKTL KQSVATLDLR NLCVMGAEAW TRTGALSGKE GQGHKTRVSS SVYCTFESAV FFVGKSKIMG NCCSDVASGA GATAGVGGSG SSAALGATND
0801: ALDYYLKSKG FNGLFSQIEL SFSASNLRDR DVLSKSDPMV VVYQKEKDAT LSEVFRSEVV LNSLAPKWIK KFIVAYHFET VQTLVFRVYD VDTKFQNSRE
0901: EMLKLDEQQF LGEATCALSE IITKSTRTST LELKRKDGFA PQAQPHHGKL IIHAEESLAS KISTEIVFRC SNLESKDLFS KSDPFLVVSK IVEHGTPIPV
1001: SKTEVRKNDL NPIWKPVFLS VQQVGSKDSP VIIECSDFNS NGKHSLIGKV QKSLSDLEKL HLAGQGINFS LPTGAGQNKV LKSQLFVDKF TETVHHTFLE
1101: YLASGFELNF MVAIDFTASN GNPRLPDSLH YIDPSGRLNA YQRAIMDVGE VLQFYDSDKR FPAWGFGARP IDAPVSHCFN LNGSSSYSEV DGIQGIMTSY
1201: TSALFNVSLA GPTLFGPVIN AAAMIASASL AQGSRKYYVL LIITDGVITD LQETKDALVS ASDLPLSILI VGVGGADFKE MEILDADKGE RLESSSGRLA
1301: SRDIVQFVAL RDVQYGEISV VQALLAELPS QFLTYMRIRN MKPIPP

Arabidopsis Description

DCD (Development and Cell Death) domain protein [Source:UniProtKB/TrEMBL;Acc:F4K518]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.