CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13085	Soybean	extracellular, vacuole	73.27	68.77
KRH44837	Soybean	extracellular, golgi	71.22	67.64
KRH13151	Soybean	nucleus, vacuole	33.27	30.52
KRH07102	Soybean	cytosol	5.1	17.86
KRH43661	Soybean	cytosol	11.63	16.96
KRH64018	Soybean	nucleus	13.67	15.51
KRH59596	Soybean	nucleus	13.06	15.02
KRH13149	Soybean	cytosol, plastid	12.45	14.63
KRH44829	Soybean	nucleus, plastid	12.45	14.35
KRG94356	Soybean	nucleus	12.45	14.25
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	12.24	14.02
KRG97516	Soybean	golgi, plasma membrane	13.06	13.94
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	12.04	13.82
KRH40948	Soybean	nucleus	10.0	13.73
KRH59243	Soybean	endoplasmic reticulum, golgi	12.86	13.7
KRH58251	Soybean	nucleus	13.67	13.65
KRH31355	Soybean	golgi, plasma membrane	12.65	13.39
KRH43098	Soybean	endoplasmic reticulum, golgi	12.45	13.26
KRG93947	Soybean	nucleus	13.27	13.1
KRH53919	Soybean	nucleus	9.59	12.53
KRH07106	Soybean	cytosol, plastid	6.94	11.68
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	7.14	9.67
KRH41052	Soybean	endoplasmic reticulum	10.61	8.97
KRH54085	Soybean	cytosol	10.0	8.48
KRH68626	Soybean	cytosol	9.8	8.28
KRH63871	Soybean	cytosol	10.41	8.2
KRH20017	Soybean	cytosol	4.49	8.06
KRH68625	Soybean	cytosol	9.39	7.78
KRG96891	Soybean	cytosol	8.98	7.41

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.30.60.180	MapMan:35.2	UniProt:A0A0R0IUS8	EMBL:ACUP02004967	ncoils:Coil
EnsemblPlantsGene:GLYMA_08G234400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
GO:GO:0046872	InterPro:IPR001841	InterPro:IPR002893	InterPro:IPR013083	EnsemblPlants:KRH44834	ProteinID:KRH44834
ProteinID:KRH44834.1	PFAM:PF01753	PFAM:PF13920	PFscan:PS50089	PFscan:PS50865	PANTHER:PTHR24202
PANTHER:PTHR24202:SF58	SUPFAM:SSF144232	TMHMM:TMhelix	UniParc:UPI0006EDD1EE	InterPro:Znf_MYND	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:19606935..19616556

Molecular Weight (calculated)

55935.7 Da

IEP (calculated)

6.103

GRAVY (calculated)

-0.417

Length

490 amino acids

Sequence
(BLAST)

001: MPAYGVNMNE MNLNCVLMII LMIILPILGL LLWLENKLSN NFCESNHYSK WKELVQINDE INSLLFGQDG NTSSAHCACS FCGRLSDIVT RCSCCNTAIY
101: CSNACHVMHW RFCHKYECVE IEMSEDLLES PSHRTHCLLM EPENDKYSFN QLDEQKIYEG DAYYIEGGEE QNSVELSDET AMPRHGNING INGCVVCGNP
201: SCKACSRCIV IKSCSRTCQH FDWRSGHRFQ CLVEKENSSE AALVNQARPA YGNVIFHCLV ENHKNSNEVE DNAHLSIPLC LEFLSGNTNS RALNSSSLSQ
301: DATNNAREVE DQLRSLKKEL AKIKDENITL RSECDEWGAR ARNSIDRLYS FKKENEHQLF ILKQENELIS NAEKQACQMI NSLSQRLHCL QIAVESGVEE
401: RQKQEEYVHM LQNECTKAKI ELQEQNKCIQ RLALELDKTT QFVGCSICLT NEKNMTFGCG HMTCLECGSK IHKCHICRRK ITIRIRLFSD

Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)

001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T

Arabidopsis Description

RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.