CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	94.86	95.08
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	75.93	75.06
Solyc03g111870.2.1	Tomato	nucleus	72.43	70.94
KRH07106	Soybean	cytosol, plastid	44.63	65.64
KRH43661	Soybean	cytosol	51.4	65.48
KRH43098	Soybean	endoplasmic reticulum, golgi	70.09	65.22
TraesCS5B01G111900.1	Wheat	cytosol	36.68	65.15
KRG94356	Soybean	nucleus	64.95	64.95
KRH59243	Soybean	endoplasmic reticulum, golgi	69.63	64.78
Zm00001d048784_P001	Maize	cytosol	46.26	64.29
KRG97516	Soybean	golgi, plasma membrane	68.46	63.83
Os01t0908700-01	Rice	plasma membrane, plastid	65.89	63.23
EES04073	Sorghum	nucleus	67.52	62.96
KRH31355	Soybean	golgi, plasma membrane	67.76	62.63
GSMUA_Achr9P29460_001	Banana	nucleus	68.46	62.61
TraesCS3B01G449200.1	Wheat	cytosol	67.52	61.88
TraesCS3D01G408900.1	Wheat	cytosol	67.29	61.8
KRH07102	Soybean	cytosol	20.09	61.43
Zm00001d042437_P005	Maize	cytosol	66.82	60.59
GSMUA_Achr8P01300_001	Banana	nucleus	60.75	59.91
KRH58251	Soybean	nucleus	67.99	59.27
GSMUA_Achr6P06710_001	Banana	nucleus	63.08	58.7
KRG93947	Soybean	nucleus	67.76	58.47
TraesCS3A01G414400.2	Wheat	cytosol	58.41	57.34
Zm00001d012101_P002	Maize	mitochondrion	66.59	56.1
KRH59596	Soybean	nucleus	55.37	55.63
KRH64018	Soybean	nucleus	54.67	54.17
KRH13149	Soybean	cytosol, plastid	52.34	53.72
KRH44829	Soybean	nucleus, plastid	52.8	53.18
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	63.32	50.09
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	42.29	50.0
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	63.55	49.82
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	62.38	49.72
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	62.38	49.54
HORVU3Hr1G092250.6	Barley	plastid	63.32	48.83
KRH40948	Soybean	nucleus	39.95	47.9
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	62.15	47.59
OQU79014	Sorghum	plastid	56.07	45.37
KRH53919	Soybean	nucleus	38.08	43.47
PGSC0003DMT400039186	Potato	cytosol	72.43	32.29
KRH20017	Soybean	cytosol	16.82	26.37
KRH68625	Soybean	cytosol	23.13	16.75
KRH68626	Soybean	cytosol	22.43	16.55
KRG96891	Soybean	cytosol	22.9	16.5
KRH54085	Soybean	cytosol	22.2	16.44
KRH41052	Soybean	endoplasmic reticulum	22.2	16.38
KRH63871	Soybean	cytosol	22.2	15.27
KRH13085	Soybean	extracellular, vacuole	17.29	14.18
KRH44837	Soybean	extracellular, golgi	16.82	13.95
KRH44834	Soybean	plasma membrane	14.02	12.24
KRH13151	Soybean	nucleus, vacuole	13.55	10.86

Protein Annotations

EntrezGene:100790800	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	EMBL:ACUP02003512	InterPro:Copine
EnsemblPlantsGene:GLYMA_06G175700	UniProt:I1KC97	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465
EnsemblPlants:KRH54288	ProteinID:KRH54288	ProteinID:KRH54288.1	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089
PANTHER:PTHR10857	PANTHER:PTHR10857:SF62	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000233AA56
InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:

Description

hypothetical protein

Coordinates

chr6:-:14858856..14863442

Molecular Weight (calculated)

47729.2 Da

IEP (calculated)

6.577

GRAVY (calculated)

-0.505

Length

428 amino acids

Sequence
(BLAST)

001: MGGSISKRRR SRQRSASNFL PRYQQPHFPQ SQDNGSVGHY GYSSQSYSGG RAPEQVKSLD RKYLRIGDDY KSLKQVTDAL AKAGLESSNL IVGFDFTKSN
101: EWTGARSFQR RCLHHIGHEQ NPYEQAISII GKTLSSFDED NLIPCFGFGD ASTHDQEVFC FYPDERFCHG FEEVLERYRE LVPQLKLAGP TSFAPVIEMA
201: ITIVEQSGGQ YHVLVIIADG QVTRSVDTEH GQLSAQEKKT VEAIVKASEY PLSIVLVGVG DGPWDMMKKF DDNIPARAFD NFQFVNFTEI MSKNMDQSRK
301: ETEFALSALM EIPSQYKATL ELNILGARRG KDIDRTPLPP PLYGAASFNS PKTSRQNSFR PSAPSSRHDV STNPPATSAS DNQVCPICLT DPKDMAFGCG
401: HQTCCECGQD LELCPICRST IDTRIKLY

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.