Factsheet for TraesCS3A01G414400.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G449200.1	Wheat	cytosol	96.79	90.36
TraesCS3D01G408900.1	Wheat	cytosol	95.41	89.27
Os01t0908700-01	Rice	plasma membrane, plastid	81.65	79.82
EES04073	Sorghum	nucleus	80.28	76.25
Zm00001d042437_P005	Maize	cytosol	80.73	74.58
HORVU3Hr1G092250.6	Barley	plastid	91.97	72.25
Zm00001d048784_P001	Maize	cytosol	49.54	70.13
Zm00001d012101_P002	Maize	mitochondrion	80.73	69.29
CDY27584	Canola	cytosol	34.4	64.66
GSMUA_Achr9P29460_001	Banana	nucleus	68.58	63.89
GSMUA_Achr8P01300_001	Banana	nucleus	63.07	63.36
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	58.72	59.12
VIT_01s0137g00460.t01	Wine grape	nucleus	59.63	58.82
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	57.34	58.41
Solyc03g111870.2.1	Tomato	nucleus	58.49	58.35
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	56.88	58.08
Bra032793.1-P	Field mustard	nucleus	50.69	57.85
CDX84957	Canola	cytosol	50.92	57.66
KRG94356	Soybean	nucleus	56.42	57.48
PGSC0003DMT400032842	Potato	mitochondrion	61.7	55.35
KRH43098	Soybean	endoplasmic reticulum, golgi	58.26	55.22
Bra023465.1-P	Field mustard	cytosol, plastid	57.11	55.21
CDX85597	Canola	cytosol, plastid	57.11	55.21
VIT_14s0066g00290.t01	Wine grape	mitochondrion	58.26	55.1
CDX91062	Canola	cytosol, plastid	57.11	55.09
KRH59243	Soybean	endoplasmic reticulum, golgi	57.8	54.78
Bra039105.1-P	Field mustard	nucleus	56.88	54.39
CDY49066	Canola	cytosol	57.34	54.35
CDY09854	Canola	nucleus, plastid	58.03	54.29
Bra008758.1-P	Field mustard	nucleus	58.03	54.29
CDX69581	Canola	nucleus, plastid	58.03	54.29
Bra000997.1-P	Field mustard	nucleus	56.88	54.15
CDX74310	Canola	cytosol	56.88	54.15
CDY37509	Canola	cytosol	57.11	54.13
CDX91935	Canola	cytosol	56.42	53.83
CDY01855	Canola	cytosol, plastid	54.36	53.74
CDX70564	Canola	cytosol, plastid	58.03	53.72
Solyc02g093520.2.1	Tomato	nucleus	60.55	53.66
AT5G14420.2	Thale cress	nucleus, plastid	57.57	53.63
KRG97516	Soybean	golgi, plasma membrane	56.42	53.59
CDX78576	Canola	cytosol, plastid	57.8	53.5
Bra006253.1-P	Field mustard	nucleus, plastid	57.57	53.29
Bra004260.1-P	Field mustard	plastid	53.9	53.29
TraesCS7A01G381300.1	Wheat	plastid	55.73	53.17
KRH58251	Soybean	nucleus	59.86	53.16
CDY56212	Canola	plastid	53.67	53.06
KRG93947	Soybean	nucleus	59.86	52.62
KRH31355	Soybean	golgi, plasma membrane	55.5	52.27
TraesCS7A01G381200.1	Wheat	cytosol, plastid	52.75	52.15
AT1G67800.2	Thale cress	plasma membrane	53.67	51.66
TraesCS5A01G368900.1	Wheat	endoplasmic reticulum, extracellular	37.16	51.27
AT3G01650.2	Thale cress	cytosol	57.11	50.92
TraesCS7A01G308900.1	Wheat	mitochondrion	46.1	50.12
TraesCS3A01G503400.1	Wheat	cytosol	43.12	49.21
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	57.11	44.54
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	34.17	41.16
AT1G24545.1	Thale cress	cytosol	16.28	39.01
TraesCS3A01G503300.1	Wheat	cytosol	38.53	35.15
CDY27585	Canola	cytosol	8.94	30.0
PGSC0003DMT400039186	Potato	cytosol	57.8	26.25
TraesCS1A01G236100.4	Wheat	cytosol	22.48	16.61
TraesCS6A01G189800.1	Wheat	cytosol	21.1	16.03
TraesCS6A01G058200.2	Wheat	cytosol, plastid	22.71	15.64
TraesCS7A01G414000.1	Wheat	cytosol	19.95	14.8

Protein Annotations

EnsemblPlants:TraesCS3A01G414400.2	EnsemblPlantsGene:TraesCS3A01G414400	InterPro:Copine	InterPro:IPR002035	InterPro:IPR036465	InterPro:VWF_A
InterPro:vWFA_dom_sf	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28	PFAM:PF07002	SEG:seg	SMART:SM00327
SUPFAM:SSF53300	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	:	:	:

Description

No Description!

Coordinates

chr3A:-:657946365..657949641

Molecular Weight (calculated)

46843.5 Da

IEP (calculated)

5.403

GRAVY (calculated)

-0.456

Length

436 amino acids

Sequence
(BLAST)

001: MGGGHSRSES RGDGSGNGRY AHSASFQQPP APQWGPPGAG GYPYGAGQDA QGGYYGAPPQ QGGYAAPYPA YQPAPVAAQP PPPAARAGAA NKPRLDRRYS
101: RIADDFRSVE QVTDALAQAG LESSNLIVGI DFTKSNEWTG KFSFHGRSLH HISNVPNPYE QGISILGQTL SKFDEDNLIP CFGFGDASTH DQDVFCFYPD
201: ERPCNGFSEA LERYRELVPH LRLAGPTSFA PIVEMAMTIV EQSGGQYHVL LIIADGQVTR SVDTASGQLS SQEQKTVDAI VRASELPLSI VLVGVGDGPW
301: DMMKEFDDNI PARAFDNFQF VNFSEIMSKN MPQSRKEAAF ALSALMEIPQ QYKATVELGI LGRRSMKAPE RVPLPPPGGS HDAYSYGSKS FSKPQPSTSS
401: SAYPPYETAH TAAPAAPSSA YDNQVKFSPV IDANVT

Best Arabidopsis Sequence Match ( AT3G01650.1 )
(BLAST)

001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY

Arabidopsis Description

RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.