CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69581	Canola	nucleus, plastid	98.07	98.07
CDX70564	Canola	cytosol, plastid	92.49	91.51
CDX91062	Canola	cytosol, plastid	88.2	90.93
CDX85597	Canola	cytosol, plastid	87.77	90.69
CDX78576	Canola	cytosol, plastid	91.2	90.23
AT5G14420.2	Thale cress	nucleus, plastid	88.41	88.03
CDX91935	Canola	cytosol	75.75	77.24
CDX74310	Canola	cytosol	75.75	77.07
CDY49066	Canola	cytosol	75.54	76.52
CDY37509	Canola	cytosol	75.11	76.09
CDY49067	Canola	extracellular	24.03	74.67
KRG94356	Soybean	nucleus	63.09	68.69
VIT_14s0066g00290.t01	Wine grape	mitochondrion	67.6	68.33
CDY27584	Canola	cytosol	33.48	67.24
CDX84957	Canola	cytosol	55.36	67.01
CDY01855	Canola	cytosol, plastid	62.45	65.99
CDY56212	Canola	plastid	61.8	65.31
Zm00001d048784_P001	Maize	cytosol	42.7	64.61
GSMUA_Achr9P29460_001	Banana	nucleus	63.95	63.68
TraesCS5B01G111900.1	Wheat	cytosol	32.83	63.49
GSMUA_Achr8P01300_001	Banana	nucleus	59.01	63.36
KRH58251	Soybean	nucleus	66.31	62.93
Os01t0908700-01	Rice	plasma membrane, plastid	60.09	62.78
EES04073	Sorghum	nucleus	61.59	62.53
Solyc02g093520.2.1	Tomato	nucleus	65.88	62.4
KRG93947	Soybean	nucleus	66.31	62.3
TraesCS3B01G449200.1	Wheat	cytosol	62.23	62.1
TraesCS3D01G408900.1	Wheat	cytosol	62.02	62.02
GSMUA_Achr6P06710_001	Banana	nucleus	60.94	61.74
Zm00001d042437_P005	Maize	cytosol	62.02	61.23
CDX84471	Canola	cytosol, mitochondrion	47.21	60.61
PGSC0003DMT400032842	Potato	mitochondrion	62.66	60.08
CDY43775	Canola	cytosol, mitochondrion	47.21	59.95
CDY39835	Canola	cytosol	47.0	59.67
CDY31343	Canola	cytosol	47.0	59.67
TraesCS3A01G414400.2	Wheat	cytosol	54.29	58.03
CDX79314	Canola	cytosol, plastid	46.14	56.73
CDX67997	Canola	cytosol	45.92	56.61
Zm00001d012101_P002	Maize	mitochondrion	61.37	56.3
CDY50776	Canola	cytosol	8.8	55.41
CDX88533	Canola	plastid	46.78	54.09
CDX87387	Canola	plastid	46.57	53.98
CDX99619	Canola	cytosol	7.73	52.94
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	60.94	52.5
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	61.37	52.38
CDY27585	Canola	cytosol	14.59	52.31
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	40.13	51.66
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	59.44	51.58
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	59.23	51.21
HORVU3Hr1G092250.6	Barley	plastid	58.58	49.19
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	58.37	48.66
OQU79014	Sorghum	plastid	53.22	46.88
CDX85680	Canola	mitochondrion, plastid	10.09	31.97
CDY52873	Canola	plastid	20.6	31.37
CDX72278	Canola	plastid	22.75	28.57
CDX98983	Canola	cytosol, plastid	14.16	26.94
CDY03984	Canola	cytosol	15.24	23.91
CDY00235	Canola	cytosol	20.82	16.72
CDX98984	Canola	cytosol	20.6	16.35
CDX70026	Canola	cytosol	20.6	16.3
CDX86951	Canola	cytosol	20.17	16.21
CDX78287	Canola	cytosol	20.39	16.18
CDX81044	Canola	cytosol	20.17	16.01
CDY06335	Canola	cytosol	19.53	15.61
CDY22660	Canola	cytosol	19.31	15.49
CDY25816	Canola	cytosol	1.29	12.24

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	GO:A0A078FA22	UniProt:A0A078FA22	EnsemblPlants:CDY09854
ProteinID:CDY09854	ProteinID:CDY09854.1	ncoils:Coil	InterPro:Copine	EnsemblPlantsGene:GSBRNA2T00031597001	InterPro:IPR001841
InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089
PANTHER:PTHR10857	PANTHER:PTHR10857:SF28	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004EE5D73
InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:

Description

BnaC09g43070DBnaC09g43070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FA22]

Coordinates

chrLK031999:-:567572..570562

Molecular Weight (calculated)

51413.2 Da

IEP (calculated)

5.457

GRAVY (calculated)

-0.547

Length

466 amino acids

Sequence
(BLAST)

001: MGTGNSKENW RQESSSSSRS ASSPSAASSS SWASHQSYPQ YGPDSYTYPP PPSYAPPPPE YTHPLPSPSY TTQPYSQPPP SQSHGNNKKR LERKYSKISD
101: EYSSLEQVTE ALAGAGLESS NLIVGIDFTK SNEWTGARSF NRKSLHFIGN SPNPYEQAIT IIGRTLAAFD EDNLIPCYGF GDASTHDQDV FSFNPEDRFC
201: NGFEEVLGRY KEIVPQLKLA GPTSFAPIID MAMTIVEQSG GQYHVLVIIA DGQVTRSVDT ENGQLSPQEQ KTVDAIVEAS KLPLSIVLVG VGDGPWDMMR
301: EFDDNIPSRA FDNFQFVNFT EIMSKNKAQS FKETEFALSA LMEIPQQYKA TLELNLLGRR NGYIPERFPL PPPMHGGYNK PKATPRVPSF KPSVPPYPTE
401: SYPVRSSPAQ PATTTSAFDN QLCPICLSNP KDMAFGCGHQ TCCECGPDLQ MCPICRAPIH TRIKLY

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.