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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 3
  • mitochondrion 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX87387 Canola plastid 97.27 97.51
CDX79314 Canola cytosol, plastid 83.62 88.92
CDX67997 Canola cytosol 83.13 88.62
AT1G79380.1 Thale cress mitochondrion 85.36 85.79
KRH43661 Soybean cytosol 59.06 70.83
CDX99619 Canola cytosol 11.66 69.12
CDY50776 Canola cytosol 12.66 68.92
KRH13149 Soybean cytosol, plastid 65.26 63.07
VIT_19s0085g01000.t01 Wine grape extracellular 59.8 62.6
KRH44829 Soybean nucleus, plastid 66.0 62.59
TraesCS7A01G308900.1 Wheat mitochondrion 61.04 61.35
TraesCS7D01G305600.1 Wheat mitochondrion 60.55 60.1
GSMUA_AchrUn_... Banana mitochondrion 62.03 60.1
GSMUA_Achr7P03440_001 Banana cytosol 46.4 59.74
Os08t0135400-01 Rice plasma membrane 59.31 59.6
Zm00001d035211_P001 Maize mitochondrion 59.55 59.41
EES13310 Sorghum mitochondrion 60.05 59.31
Solyc05g053870.2.1 Tomato plastid 66.25 59.2
CDX84471 Canola cytosol, mitochondrion 51.61 57.3
CDY31343 Canola cytosol 52.11 57.22
CDY43775 Canola cytosol, mitochondrion 51.61 56.68
CDY39835 Canola cytosol 51.61 56.68
CDY27584 Canola cytosol 32.26 56.03
CDX84957 Canola cytosol 53.35 55.84
TraesCS7B01G208900.1 Wheat mitochondrion 57.57 55.24
PGSC0003DMT400040712 Potato nucleus, plastid 66.0 54.96
CDX85597 Canola cytosol, plastid 54.84 49.0
CDX91062 Canola cytosol, plastid 53.85 48.01
CDY01855 Canola cytosol, plastid 52.36 47.85
CDX69581 Canola nucleus, plastid 54.84 47.42
CDY56212 Canola plastid 51.86 47.39
CDX74310 Canola cytosol 53.85 47.38
CDX91935 Canola cytosol 53.35 47.05
CDY37509 Canola cytosol 53.6 46.96
CDY49066 Canola cytosol 53.6 46.96
CDY09854 Canola nucleus, plastid 54.09 46.78
CDY49067 Canola extracellular 17.37 46.67
CDX70564 Canola cytosol, plastid 54.09 46.28
CDX78576 Canola cytosol, plastid 53.1 45.44
CDY27585 Canola cytosol 14.39 44.62
CDX85680 Canola mitochondrion, plastid 14.89 40.82
CDY52873 Canola plastid 28.29 37.25
CDX72278 Canola plastid 30.77 33.42
CDY03984 Canola cytosol 22.08 29.97
CDX98983 Canola cytosol, plastid 14.14 23.27
CDY25816 Canola cytosol 1.74 14.29
CDX98984 Canola cytosol 19.85 13.63
CDY00235 Canola cytosol 19.6 13.62
CDX70026 Canola cytosol 19.85 13.58
CDX78287 Canola cytosol 19.6 13.46
CDX81044 Canola cytosol 19.6 13.46
CDY06335 Canola cytosol 19.35 13.38
CDX86951 Canola cytosol 19.11 13.28
CDY22660 Canola cytosol 19.11 13.25
Protein Annotations
MapMan:19.2.2.1.5.3.2MapMan:19.2.2.1.6.2Gene3D:3.30.40.10GO:A0A078DMV9EnsemblPlants:CDX88533ProteinID:CDX88533
ProteinID:CDX88533.1InterPro:CopineEnsemblPlantsGene:GSBRNA2T00148091001InterPro:IPR001841InterPro:IPR002035InterPro:IPR013083
InterPro:IPR036465PFAM:PF07002PFAM:PF13920PFscan:PS50089PANTHER:PTHR10857PANTHER:PTHR10857:SF47
SMART:SM00184SMART:SM00327SUPFAM:SSF53300SUPFAM:SSF57850UniParc:UPI0004EEF6D7InterPro:VWF_A
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDSEG:segInterPro:vWFA_dom_sf::
Description
BnaC06g39770D
Coordinates
chrLK031855:+:1523107..1527217
Molecular Weight (calculated)
43875.0 Da
IEP (calculated)
6.002
GRAVY (calculated)
-0.300
Length
403 amino acids
Sequence
(BLAST)
001: MSTGMGNFLR KLGSGKSKSS RSFRGQRTTS SSVSLDEPSP SDASVSVSDK INAAKKKYAL IPDRFSSLDQ VSKALREAGL ESSNLILGID FTKSNEWTGK
101: TSFQGKCLHA LGETPNPYEK AIFVIGQTLA PFDEDNLIPC FGFGDSTTHD EEVFGFHSDN SPCHGFEEVL ACYRRIAPNL RLSGPTSYGP LIDAAVDIVE
201: KNNGQFHVLV IVADGQVTRG LDMPEGELSQ QEKTTIDAIV NASSYALSIV LIGVGDGPWE DMRKFDDKIP KREFDNFQFV NFTEIMKKDS PASAKETAFA
301: LAALMEIPFQ YQAAIELGLL GKTTGLAKKI NPRPPPVPYT PPVRTGQASS DSDEQTQNCP ICLTNRKDVA FGCGHMTCGE CGSRISNCPI CRVLITSRLR
401: LYT
Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)
001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T
Arabidopsis Description
RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.