Factsheet for Os08t0135400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G308900.1	Wheat	mitochondrion	83.54	83.54
TraesCS7D01G305600.1	Wheat	mitochondrion	83.04	82.02
Zm00001d035211_P001	Maize	mitochondrion	81.8	81.19
EES13310	Sorghum	mitochondrion	81.3	79.9
TraesCS7B01G208900.1	Wheat	mitochondrion	80.05	76.43
KRH43661	Soybean	cytosol	62.84	75.0
GSMUA_AchrUn_...	Banana	mitochondrion	71.07	68.51
GSMUA_Achr7P03440_001	Banana	cytosol	53.12	68.05
VIT_19s0085g01000.t01	Wine grape	extracellular	61.1	63.64
CDX79314	Canola	cytosol, plastid	59.35	62.8
CDX67997	Canola	cytosol	59.1	62.7
KRH13149	Soybean	cytosol, plastid	62.84	60.43
CDX87387	Canola	plastid	60.35	60.2
Bra035112.1-P	Field mustard	plastid	59.85	59.7
CDX88533	Canola	plastid	59.6	59.31
AT1G79380.1	Thale cress	mitochondrion	59.1	59.1
KRH44829	Soybean	nucleus, plastid	62.09	58.59
CDY50776	Canola	cytosol	10.72	58.11
CDX99619	Canola	cytosol	9.73	57.35
Solyc05g053870.2.1	Tomato	plastid	63.84	56.76
Os01t0960500-01	Rice	plasma membrane	54.61	56.59
Os08t0494300-01	Rice	plasma membrane	53.37	54.04
PGSC0003DMT400040712	Potato	nucleus, plastid	63.34	52.48
Os01t0908700-01	Rice	plasma membrane, plastid	56.86	51.12
Os06t0608800-02	Rice	nucleus	55.61	49.89
Os09t0565300-01	Rice	cytosol	11.22	46.88
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	56.61	41.58
Os05t0373300-01	Rice	plasma membrane	23.44	15.77
Os02t0521300-01	Rice	plasma membrane	19.95	13.7
Os09t0565200-02	Rice	extracellular	4.99	6.21
Os09t0565350-00	Rice	cytosol	1.5	1.35

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	EntrezGene:4344608	EMBL:AK072961	ProteinID:BAD16303.1
ProteinID:BAF22855.1	ProteinID:BAT03728.1	InterPro:Copine	ProteinID:EEE68002.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009605	GO:GO:0009607	GO:GO:0009611	GO:GO:0009719	GO:GO:0009867	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0042742	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	EnsemblPlantsGene:Os08g0135400	EnsemblPlants:Os08t0135400-01	PFAM:PF07002	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF47	UniProt:Q6YYC5	SMART:SM00327	SUPFAM:SSF53300
SUPFAM:SSF57850	UniParc:UPI0000358D00	InterPro:VWF_A	RefSeq:XP_015650866.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

RING finger protein OsRFPHC-2, RING-HC protein 2Copine domain containing protein. (Os08t0135400-01)

Coordinates

chr8:+:2007908..2011520

Molecular Weight (calculated)

43713.0 Da

IEP (calculated)

7.456

GRAVY (calculated)

-0.339

Length

401 amino acids

Sequence
(BLAST)

001: MGGVIGALFR GGGHRREMHR APMNQPGYGG GGENHRRAML TKKYSYIPDN YQSLDQVTAA LRDQGLESSN LILGIDFTKS NEWTGKRSFS GQSLHKIGST
101: PNPYEQAISI IGKTLAPFDD DNLIPCFGFG DATTHDYNVF SFHPDNSPCH GFEEVLSCYK KIVPHLRLSG PTSFAPIVEA AVDIVDRSGG QYHVLVIVAD
201: GQVTRSVDTS DNDLSPQERR TVDSVVMASS YPLSIVLVGV GDGPWEDMQK FDDKIPARQF DNFQFVNFTS IMSRSTTQQQ KESAFALAAL MEVPIQYKAT
301: MELGILGRST GKAKRIMPAP PPLPSAAGRQ PSLRREDSAA ATAAAAPPSP REDQVCPICL TNAKDLAFGC GHMCCRECGE SLTKCPICRQ TIRSKLRLYS
401: G

Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)

001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T

Arabidopsis Description

RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.