Factsheet for Os06t0608800-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20338	Sorghum	nucleus	88.14	88.14
Zm00001d046554_P003	Maize	cytosol, plastid	87.02	87.42
TraesCS7B01G283200.1	Wheat	cytosol	88.14	86.4
TraesCS7A01G381300.1	Wheat	plastid	87.7	85.78
TraesCS7D01G377600.1	Wheat	plastid	87.47	85.56
TraesCS7A01G381200.1	Wheat	cytosol, plastid	80.54	81.63
Zm00001d036831_P006	Maize	cytosol	83.45	81.44
GSMUA_Achr2P05470_001	Banana	nucleus	67.56	80.75
TraesCS7D01G377500.1	Wheat	plastid	81.88	80.62
TraesCS7B01G283100.1	Wheat	cytosol	79.87	80.59
Os08t0494300-01	Rice	plasma membrane	59.96	67.68
KRH07106	Soybean	cytosol, plastid	41.61	63.92
VIT_00s0780g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	59.28	60.64
Os01t0908700-01	Rice	plasma membrane, plastid	57.49	57.62
Os08t0135400-01	Rice	plasma membrane	49.89	55.61
Os01t0960500-01	Rice	plasma membrane	48.1	55.56
KRH07102	Soybean	cytosol	16.78	53.57
Os09t0565300-01	Rice	cytosol	10.74	50.0
CDY49067	Canola	extracellular	16.78	50.0
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	58.17	47.62
Bra012681.1-P	Field mustard	cytosol	10.29	41.07
Bra018339.1-P	Field mustard	cytosol	12.53	37.84
CDY03984	Canola	cytosol	17.0	25.59
Os05t0373300-01	Rice	plasma membrane	22.37	16.78
Os02t0521300-01	Rice	plasma membrane	21.7	16.61
Os09t0565200-02	Rice	extracellular	4.7	6.52
Os09t0565350-00	Rice	cytosol	2.01	2.03

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	EntrezGene:4341497	EMBL:AK067750	EMBL:AK100593
ProteinID:BAD35622.1	ProteinID:BAF19957.1	ProteinID:BAS98558.1	InterPro:Copine	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	EnsemblPlantsGene:Os06g0608800	EnsemblPlants:Os06t0608800-02	PFAM:PF07002	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28	UniProt:Q69V56	SMART:SM00184	SMART:SM00327
SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000040385E	InterPro:VWF_A	RefSeq:XP_015643161.1	RefSeq:XP_015643162.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0608800-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0608800-02);Similar to Copine-1. (Os06t0608800-03);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0608800-04)

Coordinates

chr6:-:24229385..24234511

Molecular Weight (calculated)

49810.2 Da

IEP (calculated)

6.058

GRAVY (calculated)

-0.507

Length

447 amino acids

Sequence
(BLAST)

001: MGAKDSKPSY SYSSSYDHGN SSSGYNSRYP AYPANASSSQ NTRYAPSMEN YVQPETHARL QRKYSRIGDD YRSLNQVTEA LAQAGLESSN LIVGIDFTKS
101: NEWTGKLSFN RRCLHDIGNT PNPYEQAISI IGRTLSAFDE DNLIPCFGFG DASTHDQEVF SFYPENRPCN GFEEALERYR EIVPTLRLAG PTSFAPMIET
201: AIGIVDSTGG QYHVLLIIAD GQVTRSVDTQ SGQLSPQERD TIDAIVKASQ FPLSIVLVGV GDGPWDMMHQ FDDNIPARSF DNFQFVNFTD IMSKSIAADR
301: KEAEFALSAL MEIPTQYKAT LDLQLLGRRQ RIQPRIPLPP PMRNAYSRST SFDQHSGVYS RSSSFGPQTS GFQQSESFKQ RQPVATTAPD TYTSESSLEG
401: RLLCAICMDK SKDLAFGCGH QTCYECGKNL VRCPMCQQHI TTRIRLY

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.