Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
- nucleus 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
17189339
nucleus: 19621931 extracellular: 23159799 extracellular: 26072143 plasma membrane: 27800704 extracellular: 28232208 |
msms PMID:
26072143
doi
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
23159799
doi
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID:
17189339
doi
Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400049766 | Potato | extracellular | 5.28 | 14.41 |
Os01t0908700-01 | Rice | plasma membrane, plastid | 7.45 | 5.38 |
Os08t0135400-01 | Rice | plasma membrane | 6.21 | 4.99 |
Os06t0608800-02 | Rice | nucleus | 6.52 | 4.7 |
Os12t0288400-01 | Rice | endoplasmic reticulum, extracellular, vacuole | 7.76 | 4.58 |
Os01t0960500-01 | Rice | plasma membrane | 4.66 | 3.88 |
Os08t0494300-01 | Rice | plasma membrane | 4.04 | 3.28 |
Os09t0565300-01 | Rice | cytosol | 0.62 | 2.08 |
Solyc10g045520.1.1 | Tomato | cytosol | 0.62 | 1.44 |
Bra007134.1-P | Field mustard | mitochondrion | 1.24 | 1.1 |
Os05t0373300-01 | Rice | plasma membrane | 1.24 | 0.67 |
Os02t0521300-01 | Rice | plasma membrane | 0.0 | 0.0 |
Os09t0565350-00 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
MapMan:16.12.5.5.17 | Gene3D:3.30.70.330 | EntrezGene:4347871 | EMBL:AK069121 | EMBL:AK104354 | ProteinID:BAD46644.1 |
ProteinID:BAD46651.1 | ProteinID:BAF25860.1 | ProteinID:BAT09444.1 | ncoils:Coil | ProteinID:EEE70245.1 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
EnsemblPlantsGene:Os09g0565200 | EnsemblPlants:Os09t0565200-02 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44202 | PANTHER:PTHR44202:SF5 |
UniProt:Q650W6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000043A5E7 |
RefSeq:XP_015611613.1 | SEG:seg | : | : | : | : |
Description
Similar to Nucleic acid-binding protein precursor. (Os09t0565200-02)
Coordinates
chr9:-:22505067..22507526
Molecular Weight (calculated)
35426.9 Da
IEP (calculated)
4.125
GRAVY (calculated)
-0.449
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSIAMSLR SLAATDAFLP KPSPSSAPFL LLLSPSTPRL RLHLHLRSTR RLPLAPLAAS DSFESASSSS AAALDFAEPG AAEESDVPEE SDQEEEGYAP
101: EAEEEAEADE EVEEEAVEAS AEVAEEAEDV EEVGEYVEPP EEAKVYVGNL PYDIDSERLA QLFEQAGIVE VSEVIYNRET DRSRGFGFVT MSTVEEAEKA
201: VEMFHRYDVD GRLLTVNKAA PRGARVERPP RQFGPSFRIY VGNLPWQVDD SRLVQLFSEH GKVVDARVVY DRETGRSRGF GFVTMATQEE LDDAIAALDG
301: QSLDGRALRV NVAEERPPRR GF
101: EAEEEAEADE EVEEEAVEAS AEVAEEAEDV EEVGEYVEPP EEAKVYVGNL PYDIDSERLA QLFEQAGIVE VSEVIYNRET DRSRGFGFVT MSTVEEAEKA
201: VEMFHRYDVD GRLLTVNKAA PRGARVERPP RQFGPSFRIY VGNLPWQVDD SRLVQLFSEH GKVVDARVVY DRETGRSRGF GFVTMATQEE LDDAIAALDG
301: QSLDGRALRV NVAEERPPRR GF
001: MASSIVTSSL KPLAMADSSS STIFSHPSIS STISSSRIRS SSVSLLTGRI NLPLSFSRVS LSLKTKTHLK KSPFVSFVAQ TSDWAEEGGE GSVAVEETEN
101: SLESQDVSEG DESEGDASEG DVSEGDESEG DVSEGAVSER AEFPEPSEEA KLFVGNLAYD VNSQALAMLF EQAGTVEIAE VIYNRETDQS RGFGFVTMSS
201: VDEAETAVEK FNRYDLNGRL LTVNKAAPRG SRPERAPRVY EPAFRVYVGN LPWDVDNGRL EQLFSEHGKV VEARVVYDRE TGRSRGFGFV TMSDVDELNE
301: AISALDGQNL EGRAIRVNVA EERPPRRGY
101: SLESQDVSEG DESEGDASEG DVSEGDESEG DVSEGAVSER AEFPEPSEEA KLFVGNLAYD VNSQALAMLF EQAGTVEIAE VIYNRETDQS RGFGFVTMSS
201: VDEAETAVEK FNRYDLNGRL LTVNKAAPRG SRPERAPRVY EPAFRVYVGN LPWDVDNGRL EQLFSEHGKV VEARVVYDRE TGRSRGFGFV TMSDVDELNE
301: AISALDGQNL EGRAIRVNVA EERPPRRGY
Arabidopsis Description
CP31A31 kDa ribonucleoprotein, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q04836]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.