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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • plastid 8
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 17189339
nucleus: 19621931
extracellular: 23159799
extracellular: 26072143
plasma membrane: 27800704
extracellular: 28232208
msms PMID: 26072143 doi
B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 23159799 doi
SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID: 17189339 doi
T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky
Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400049766 Potato extracellular 5.28 14.41
Os01t0908700-01 Rice plasma membrane, plastid 7.45 5.38
Os08t0135400-01 Rice plasma membrane 6.21 4.99
Os06t0608800-02 Rice nucleus 6.52 4.7
Os12t0288400-01 Rice endoplasmic reticulum, extracellular, vacuole 7.76 4.58
Os01t0960500-01 Rice plasma membrane 4.66 3.88
Os08t0494300-01 Rice plasma membrane 4.04 3.28
Os09t0565300-01 Rice cytosol 0.62 2.08
Solyc10g045520.1.1 Tomato cytosol 0.62 1.44
Bra007134.1-P Field mustard mitochondrion 1.24 1.1
Os05t0373300-01 Rice plasma membrane 1.24 0.67
Os02t0521300-01 Rice plasma membrane 0.0 0.0
Os09t0565350-00 Rice cytosol 0.0 0.0
Protein Annotations
MapMan:16.12.5.5.17Gene3D:3.30.70.330EntrezGene:4347871EMBL:AK069121EMBL:AK104354ProteinID:BAD46644.1
ProteinID:BAD46651.1ProteinID:BAF25860.1ProteinID:BAT09444.1ncoils:CoilProteinID:EEE70245.1GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0005488InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sf
EnsemblPlantsGene:Os09g0565200EnsemblPlants:Os09t0565200-02PFAM:PF00076PFscan:PS50102PANTHER:PTHR44202PANTHER:PTHR44202:SF5
UniProt:Q650W6InterPro:RBD_domain_sfInterPro:RRM_domSMART:SM00360SUPFAM:SSF54928UniParc:UPI000043A5E7
RefSeq:XP_015611613.1SEG:seg::::
Description
Similar to Nucleic acid-binding protein precursor. (Os09t0565200-02)
Coordinates
chr9:-:22505067..22507526
Molecular Weight (calculated)
35426.9 Da
IEP (calculated)
4.125
GRAVY (calculated)
-0.449
Length
322 amino acids
Sequence
(BLAST)
001: MASSIAMSLR SLAATDAFLP KPSPSSAPFL LLLSPSTPRL RLHLHLRSTR RLPLAPLAAS DSFESASSSS AAALDFAEPG AAEESDVPEE SDQEEEGYAP
101: EAEEEAEADE EVEEEAVEAS AEVAEEAEDV EEVGEYVEPP EEAKVYVGNL PYDIDSERLA QLFEQAGIVE VSEVIYNRET DRSRGFGFVT MSTVEEAEKA
201: VEMFHRYDVD GRLLTVNKAA PRGARVERPP RQFGPSFRIY VGNLPWQVDD SRLVQLFSEH GKVVDARVVY DRETGRSRGF GFVTMATQEE LDDAIAALDG
301: QSLDGRALRV NVAEERPPRR GF
Best Arabidopsis Sequence Match ( AT4G24770.2 )
(BLAST)
001: MASSIVTSSL KPLAMADSSS STIFSHPSIS STISSSRIRS SSVSLLTGRI NLPLSFSRVS LSLKTKTHLK KSPFVSFVAQ TSDWAEEGGE GSVAVEETEN
101: SLESQDVSEG DESEGDASEG DVSEGDESEG DVSEGAVSER AEFPEPSEEA KLFVGNLAYD VNSQALAMLF EQAGTVEIAE VIYNRETDQS RGFGFVTMSS
201: VDEAETAVEK FNRYDLNGRL LTVNKAAPRG SRPERAPRVY EPAFRVYVGN LPWDVDNGRL EQLFSEHGKV VEARVVYDRE TGRSRGFGFV TMSDVDELNE
301: AISALDGQNL EGRAIRVNVA EERPPRRGY
Arabidopsis Description
CP31A31 kDa ribonucleoprotein, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q04836]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.