Factsheet for Os12t0288400-01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G111900.1	Wheat	cytosol	38.64	87.55
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	80.77	82.12
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	81.32	82.07
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	79.3	80.33
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	79.3	77.46
OQU79014	Sorghum	plastid	72.89	75.24
CDY27584	Canola	cytosol	27.29	64.22
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	50.73	63.97
Os01t0908700-01	Rice	plasma membrane, plastid	52.01	63.68
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	49.82	63.55
Bra023465.1-P	Field mustard	cytosol, plastid	52.38	63.41
CDX85597	Canola	cytosol, plastid	52.38	63.41
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	49.45	63.23
Bra032793.1-P	Field mustard	nucleus	44.14	63.09
VIT_01s0137g00460.t01	Wine grape	nucleus	50.92	62.9
AT5G14420.2	Thale cress	nucleus, plastid	53.66	62.61
CDX84957	Canola	cytosol	44.14	62.6
CDX91062	Canola	cytosol, plastid	51.65	62.39
KRG94356	Soybean	nucleus	48.9	62.38
VIT_14s0066g00290.t01	Wine grape	mitochondrion	52.56	62.26
GSMUA_Achr6P06710_001	Banana	nucleus	52.01	61.74
CDX69581	Canola	nucleus, plastid	52.56	61.59
Bra008758.1-P	Field mustard	nucleus	52.56	61.59
CDY09854	Canola	nucleus, plastid	52.38	61.37
Solyc03g111870.2.1	Tomato	nucleus	49.08	61.33
KRH43098	Soybean	endoplasmic reticulum, golgi	51.65	61.3
CDX70564	Canola	cytosol, plastid	52.75	61.15
Bra000997.1-P	Field mustard	nucleus	51.28	61.14
CDX91935	Canola	cytosol	51.1	61.05
Bra006253.1-P	Field mustard	nucleus, plastid	52.56	60.93
CDX74310	Canola	cytosol	51.1	60.92
CDX78576	Canola	cytosol, plastid	52.38	60.72
Bra039105.1-P	Field mustard	nucleus	50.55	60.53
CDY49066	Canola	cytosol	50.73	60.22
KRH59243	Soybean	endoplasmic reticulum, golgi	50.73	60.22
CDY37509	Canola	cytosol	50.55	60.0
CDY56212	Canola	plastid	48.17	59.64
Bra004260.1-P	Field mustard	plastid	48.17	59.64
CDY01855	Canola	cytosol, plastid	47.99	59.41
Os08t0494300-01	Rice	plasma membrane	42.86	59.09
KRG97516	Soybean	golgi, plasma membrane	49.63	59.04
Os06t0608800-02	Rice	nucleus	47.62	58.17
AT1G67800.2	Thale cress	plasma membrane	48.17	58.06
KRH31355	Soybean	golgi, plasma membrane	48.9	57.67
Solyc02g093520.2.1	Tomato	nucleus	51.65	57.32
AT3G01650.2	Thale cress	cytosol	51.28	57.26
KRG93947	Soybean	nucleus	51.65	56.85
KRH58251	Soybean	nucleus	50.92	56.62
Os08t0135400-01	Rice	plasma membrane	41.58	56.61
PGSC0003DMT400032842	Potato	mitochondrion	49.82	55.97
Os01t0960500-01	Rice	plasma membrane	38.83	54.78
Os09t0565300-01	Rice	cytosol	8.97	51.04
CDY27585	Canola	cytosol	11.54	48.46
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	30.95	46.69
AT1G24545.1	Thale cress	cytosol	14.65	43.96
PGSC0003DMT400039186	Potato	cytosol	48.72	27.71
Os05t0373300-01	Rice	plasma membrane	18.13	16.61
Os02t0521300-01	Rice	plasma membrane	16.85	15.75
Os09t0565200-02	Rice	extracellular	4.58	7.76
Os09t0565350-00	Rice	cytosol	4.4	5.42

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	EntrezGene:4352002	ProteinID:ABA97133.2	EMBL:AK071030
ProteinID:BAF29612.1	ProteinID:BAT16764.1	InterPro:Copine	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	EnsemblPlantsGene:Os12g0288400	EnsemblPlants:Os12t0288400-01	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089
PANTHER:PTHR10857	PANTHER:PTHR10857:SF68	UniProt:Q2QTN7	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
TMHMM:TMhelix	UniParc:UPI0000D89D15	InterPro:VWF_A	RefSeq:XP_015620310.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

Similar to Ubiquitin ligase protein mib (EC 6.3.2.-) (Mind bomb protein). (Os12t0288400-01)

Coordinates

chr12:-:11045896..11057114

Molecular Weight (calculated)

58719.4 Da

IEP (calculated)

6.026

GRAVY (calculated)

-0.220

Length

546 amino acids

Sequence
(BLAST)

001: MSGFLAVVGK VGTFLLWLLF LVLQTATKIV GSLLAAGPPP ADAQEAAAAA AARRRSPPAS PHSGGGATDP YQPPQLWDPP PPSSPYSAGH AADEYSSSSS
101: YRRRGASAPP AEDVVVSSSY SRPAAAVASA PQACTVSSAP PLRAVETRSP APSRAAAAVG GKRPKLERKY SKIVDQYRSL DEVIEALAQA GLESSNLIIG
201: IDFTKSNEWT GKRSFNGMSL HHIGDSPNPY EQAITIIGQT LSAFDEDNLI PCYGFGDAST HDQDVFAFYP DERPCNGFQE ALARYREIVP HLRLSGPTSF
301: SPIIEMATTI VEQSGGQYHV LVIIADGQVT RSVDTEFGQL STQEQMTVDA IVQASEFPLS IILVGVGDGP WDMMKEFDDN IPARSFDNFQ FVNFTSIMSK
401: KISQSKKETE FALSALMEIP LQYKATLELG ILGRRFAKSP ERVPLPPPFA SYNTISRAAP SRANSFRSMP SHPRDEAPVD SAITASVTSP PSVDARAAEP
501: QLCPVCLSKP RDMAFGCGHQ TCAECGPQVE HCPICRRPID TRVKLY

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.