Factsheet for Bra032793.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27585	Canola	cytosol	33.51	98.46
Bra004260.1-P	Field mustard	plastid	77.75	67.35
VIT_01s0137g00460.t01	Wine grape	nucleus	69.63	60.18
Zm00001d048784_P001	Maize	cytosol	47.91	59.42
KRH43098	Soybean	endoplasmic reticulum, golgi	69.63	57.83
Bra024254.1-P	Field mustard	mitochondrion	54.97	57.38
KRG97516	Soybean	golgi, plasma membrane	68.85	57.3
KRH59243	Soybean	endoplasmic reticulum, golgi	68.59	56.96
GSMUA_Achr8P01300_001	Banana	nucleus	64.66	56.91
Bra023465.1-P	Field mustard	cytosol, plastid	67.02	56.76
KRH31355	Soybean	golgi, plasma membrane	68.59	56.59
Os01t0908700-01	Rice	plasma membrane, plastid	65.71	56.28
Bra008758.1-P	Field mustard	nucleus	67.54	55.36
GSMUA_Achr9P29460_001	Banana	nucleus	67.02	54.7
Bra039105.1-P	Field mustard	nucleus	65.18	54.61
EES04073	Sorghum	nucleus	65.44	54.47
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	48.69	54.39
Bra000997.1-P	Field mustard	nucleus	65.18	54.37
TraesCS3B01G449200.1	Wheat	cytosol	65.97	53.96
Bra006253.1-P	Field mustard	nucleus, plastid	66.49	53.93
TraesCS3D01G408900.1	Wheat	cytosol	65.71	53.86
TraesCS5B01G111900.1	Wheat	cytosol	33.77	53.53
Zm00001d042437_P005	Maize	cytosol	65.18	52.75
GSMUA_Achr6P06710_001	Banana	nucleus	63.09	52.39
Bra035112.1-P	Field mustard	plastid	54.97	52.24
TraesCS3A01G414400.2	Wheat	cytosol	57.85	50.69
Zm00001d012101_P002	Maize	mitochondrion	65.18	49.02
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	62.57	44.51
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	63.09	44.14
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	62.04	43.81
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	61.78	43.78
HORVU3Hr1G092250.6	Barley	plastid	62.3	42.88
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	62.3	42.58
OQU79014	Sorghum	plastid	55.5	40.08
Bra012681.1-P	Field mustard	cytosol	10.99	37.5
Bra018339.1-P	Field mustard	cytosol	13.35	34.46
Bra021976.1-P	Field mustard	plastid	25.13	25.81
Bra014181.1-P	Field mustard	plastid	23.3	23.42
Bra007134.1-P	Field mustard	mitochondrion	17.54	18.46
Bra029301.1-P	Field mustard	cytosol, plastid	22.25	14.63
Bra010041.1-P	Field mustard	cytosol	21.99	14.48
Bra009273.1-P	Field mustard	cytosol	21.99	14.26
Bra005931.1-P	Field mustard	cytosol	21.73	14.14
Bra031645.1-P	Field mustard	cytosol	20.94	13.72

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra032793	EnsemblPlants:Bra032793.1	EnsemblPlants:Bra032793.1-P
InterPro:Copine	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M4EVG0
PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28	SMART:SM00184
SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000254260C	InterPro:VWF_A	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

AT3G01650 (E=1e-133) RGLG1 | RGLG1 (RING domain Ligase1); protein binding / zinc ion binding

Coordinates

chrA09:-:12746720..12748477

Molecular Weight (calculated)

41384.8 Da

IEP (calculated)

6.497

GRAVY (calculated)

-0.273

Length

382 amino acids

Sequence
(BLAST)

001: MGSSSSKSRI NSTPQHPSGF QQKNHDKKYS LIGDNYRSTD EVTAALLQAG LESSNLIVGV DVTKSNEWTG ARSFDGKSLH HIGPAPNPYE QAISIIGKTL
101: SSFDEDNLIP CYGFGDATTH DQDVFSFFPD DAFCNGFEQV LARYREIVPQ LCLAGPTSFA PIIERAMTIV EESGGQYHVL LIIADGQVTT QHGGLSSQER
201: KTIDAIVRAS RYPLSIVLVG VGDGPWDTMR QFDDNIPARA FDNFQFVNFT EIMGKNIDAG RKEAEFAVSA LMEIPSQYKA TLALGLLGRR TGNCPNKTAR
301: QPPISGCNRS VSKSSKSSCS SSVTSAPPTS TGSNESQVCP ICLVKTKNMA FNCGHQTCDE CGEAIQTCPI CRVSIAVRIK LY

Best Arabidopsis Sequence Match ( AT1G67800.4 )
(BLAST)

001: MGGSSSKESP RGGGSGRRYE RSVSGSSSYS SAWDQSSYYQ TPNHPSASPV SSYNSGRQTP KNLERKYSRI ADNYRSIDEV TAALSHAGLE SSNLIVGIDV
101: TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM CYREIVPQLR LSGPTSFAPI
201: IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA RAFDNFQFVN FTDIMSKNID
301: PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST THNESQQQFC PVCLVSAKNM
401: AFNCGHQTCA GCGEDLHVCP ICRSSISVRI KLY

Arabidopsis Description

Copine (Calcium-dependent phospholipid-binding protein) family [Source:UniProtKB/TrEMBL;Acc:F4HTR6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.