Factsheet for Bra035112.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87387	Canola	plastid	99.0	99.0
AT1G79380.1	Thale cress	mitochondrion	85.07	85.29
KRH43661	Soybean	cytosol	58.46	69.94
KRH13149	Soybean	cytosol, plastid	64.93	62.59
VIT_19s0085g01000.t01	Wine grape	extracellular	59.7	62.34
KRH44829	Soybean	nucleus, plastid	65.67	62.12
TraesCS7A01G308900.1	Wheat	mitochondrion	60.95	61.1
TraesCS7D01G305600.1	Wheat	mitochondrion	60.45	59.85
Os08t0135400-01	Rice	plasma membrane	59.7	59.85
Zm00001d035211_P001	Maize	mitochondrion	59.2	58.91
GSMUA_AchrUn_...	Banana	mitochondrion	60.95	58.89
EES13310	Sorghum	mitochondrion	59.7	58.82
GSMUA_Achr7P03440_001	Banana	cytosol	45.77	58.79
Solyc05g053870.2.1	Tomato	plastid	65.92	58.76
Bra024254.1-P	Field mustard	mitochondrion	50.99	56.01
TraesCS7B01G208900.1	Wheat	mitochondrion	57.46	55.0
Bra032793.1-P	Field mustard	nucleus	52.24	54.97
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	46.77	54.97
PGSC0003DMT400040712	Potato	nucleus, plastid	65.67	54.55
Bra012681.1-P	Field mustard	cytosol	14.93	53.57
Bra023465.1-P	Field mustard	cytosol, plastid	54.48	48.56
Bra008758.1-P	Field mustard	nucleus	54.48	47.0
Bra000997.1-P	Field mustard	nucleus	53.48	46.94
Bra004260.1-P	Field mustard	plastid	51.49	46.94
Bra039105.1-P	Field mustard	nucleus	53.23	46.93
Bra018339.1-P	Field mustard	cytosol	16.92	45.95
Bra006253.1-P	Field mustard	nucleus, plastid	52.99	45.22
Bra021976.1-P	Field mustard	plastid	31.34	33.87
Bra014181.1-P	Field mustard	plastid	28.11	29.74
Bra007134.1-P	Field mustard	mitochondrion	13.18	14.6
Bra029301.1-P	Field mustard	cytosol, plastid	19.65	13.6
Bra010041.1-P	Field mustard	cytosol	19.4	13.45
Bra009273.1-P	Field mustard	cytosol	19.65	13.41
Bra005931.1-P	Field mustard	cytosol	19.4	13.29
Bra031645.1-P	Field mustard	cytosol	19.15	13.21

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra035112	EnsemblPlants:Bra035112.1	EnsemblPlants:Bra035112.1-P
InterPro:Copine	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009611
GO:GO:0009719	GO:GO:0009867	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0042742	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M4F215
PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF47	SMART:SM00184
SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0002541D4F	InterPro:VWF_A	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

AT1G79380 (E=3e-172) | copine-related

Coordinates

chrA07:+:22223933..22226927

Molecular Weight (calculated)

43937.1 Da

IEP (calculated)

5.740

GRAVY (calculated)

-0.316

Length

402 amino acids

Sequence
(BLAST)

001: MSTGMGNFLR KLGSGKSKSS RSFRGERTTS SSVSNEPSPS DASLSVSDKI NAAKKKYALI PDRFSSLDQV SKALREAGLE SSNLILGIDF TKSNEWTGKT
101: SFEGKCLHAL GETPNPYEKA IFVIGQTLAP FDEDNLIPCF GFGDSTTHDE EVFGFHSDNS PCHGFEEVLA CYRRIAPNLR LSGPTSYGLL IDAAVDIVEK
201: NNGQFHVLVI VADGQVTRGL DMPEGELSQQ EKTTIDAIVN ASSYALSIIL IGVGDGPWED MRKFDDKIPK REFDNFQFVN FTEIMKRDTQ QSAKETAFAL
301: AALMEIPFQY QAAIELGLLG KTTGLAKKIN PRPPPVPYTP PVRTGQASSD SDEQTQNCPI CLTNRKDVAF GCGHMTCGEC GSRISNCPIC RVLITSRLRL
401: YT

Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)

001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T

Arabidopsis Description

RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.