Factsheet for Bra004260.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56212	Canola	plastid	99.32	99.32
AT1G67800.2	Thale cress	plasma membrane	84.13	81.9
Bra032793.1-P	Field mustard	nucleus	67.35	77.75
VIT_01s0137g00460.t01	Wine grape	nucleus	65.08	64.93
KRH43098	Soybean	endoplasmic reticulum, golgi	67.35	64.57
KRH59243	Soybean	endoplasmic reticulum, golgi	66.44	63.7
KRG97516	Soybean	golgi, plasma membrane	66.21	63.62
KRH31355	Soybean	golgi, plasma membrane	66.67	63.5
Bra023465.1-P	Field mustard	cytosol, plastid	64.85	63.41
Bra008758.1-P	Field mustard	nucleus	65.53	62.02
Bra006253.1-P	Field mustard	nucleus, plastid	65.53	61.36
Bra039105.1-P	Field mustard	nucleus	61.68	59.65
Os01t0908700-01	Rice	plasma membrane, plastid	60.32	59.64
Bra000997.1-P	Field mustard	nucleus	61.9	59.61
TraesCS5B01G111900.1	Wheat	cytosol	32.43	59.34
GSMUA_Achr8P01300_001	Banana	nucleus	58.28	59.22
Zm00001d048784_P001	Maize	cytosol	41.27	59.09
EES04073	Sorghum	nucleus	61.22	58.82
GSMUA_Achr6P06710_001	Banana	nucleus	60.77	58.26
GSMUA_Achr9P29460_001	Banana	nucleus	61.68	58.12
Bra024254.1-P	Field mustard	mitochondrion	48.07	57.92
TraesCS3B01G449200.1	Wheat	cytosol	61.0	57.6
TraesCS3D01G408900.1	Wheat	cytosol	60.77	57.51
Zm00001d042437_P005	Maize	cytosol	60.54	56.57
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	42.86	55.26
TraesCS3A01G414400.2	Wheat	cytosol	53.29	53.9
Zm00001d012101_P002	Maize	mitochondrion	61.45	53.35
Bra035112.1-P	Field mustard	plastid	46.94	51.49
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	58.73	48.23
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	59.64	48.17
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	58.73	47.87
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	58.05	47.5
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	58.28	45.98
HORVU3Hr1G092250.6	Barley	plastid	57.37	45.59
OQU79014	Sorghum	plastid	52.38	43.67
Bra012681.1-P	Field mustard	cytosol	10.66	41.96
Bra018339.1-P	Field mustard	cytosol	12.47	37.16
Bra021976.1-P	Field mustard	plastid	22.68	26.88
Bra014181.1-P	Field mustard	plastid	21.32	24.74
Bra007134.1-P	Field mustard	mitochondrion	16.78	20.39
Bra009273.1-P	Field mustard	cytosol	21.77	16.3
Bra005931.1-P	Field mustard	cytosol	21.54	16.18
Bra010041.1-P	Field mustard	cytosol	20.86	15.86
Bra031645.1-P	Field mustard	cytosol	20.86	15.78
Bra029301.1-P	Field mustard	cytosol, plastid	20.41	15.49

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra004260	EnsemblPlants:Bra004260.1	EnsemblPlants:Bra004260.1-P
InterPro:Copine	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M4CJ76
PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28	SMART:SM00327
SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI00025416C7	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

AT1G67800 (E=5e-182) | copine-related

Coordinates

chrA07:-:17692298..17694519

Molecular Weight (calculated)

48206.2 Da

IEP (calculated)

6.503

GRAVY (calculated)

-0.427

Length

441 amino acids

Sequence
(BLAST)

001: MGGSSSKDSN RGGRSSRRYP GSPSASSSAS SWGPYGDHQN SSYHTPSHPS ASPAPSYNNP RWQTQKNLER KYSRIGDNYR SIDEVTAALS HAGLESSNLI
101: VGIDVTKSNE WTGARSFGRK SLHYIGTTPN PYQQAISIIG KTLSVFDEDN LIPCYGFGDA TTHDQDVFSF NANDTFCNGF EEVLMCYREI VPQLRLAGPT
201: SFAPIIERAI TIVEESGGQY HVLLIIADGQ VTRSVDTEHG AVSPQEQQTI DAIVRASEYP LSIVLVGVGD GPWDTMRQFD DNIPARAFDN FQFVNFTEIM
301: SKNVDPARKE AEFALSALME IPSQYKATLE LGLLGRRTGN CPNRFALPPP TYAAQSMRNS PRTSRSTSFQ TRTPQAYDSG VAAATAPVSN ARNDGQLCPI
401: CLVIPKNMAF NCGHQTCSDC GEDLHVCPIC RSSISVRIKL Y

Best Arabidopsis Sequence Match ( AT1G67800.4 )
(BLAST)

001: MGGSSSKESP RGGGSGRRYE RSVSGSSSYS SAWDQSSYYQ TPNHPSASPV SSYNSGRQTP KNLERKYSRI ADNYRSIDEV TAALSHAGLE SSNLIVGIDV
101: TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM CYREIVPQLR LSGPTSFAPI
201: IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA RAFDNFQFVN FTDIMSKNID
301: PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST THNESQQQFC PVCLVSAKNM
401: AFNCGHQTCA GCGEDLHVCP ICRSSISVRI KLY

Arabidopsis Description

Copine (Calcium-dependent phospholipid-binding protein) family [Source:UniProtKB/TrEMBL;Acc:F4HTR6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.