Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 5
- vacuole 5
- plasma membrane 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY56212 | Canola | plastid | 81.9 | 84.13 |
| CDY01855 | Canola | cytosol, plastid | 81.9 | 84.13 |
| Bra004260.1-P | Field mustard | plastid | 81.9 | 84.13 |
| KRH43098 | Soybean | endoplasmic reticulum, golgi | 65.34 | 64.35 |
| KRG97516 | Soybean | golgi, plasma membrane | 64.9 | 64.05 |
| VIT_01s0137g00460.t01 | Wine grape | nucleus | 62.03 | 63.57 |
| KRH31355 | Soybean | golgi, plasma membrane | 64.9 | 63.5 |
| KRH59243 | Soybean | endoplasmic reticulum, golgi | 64.46 | 63.48 |
| AT5G14420.2 | Thale cress | nucleus, plastid | 63.58 | 61.54 |
| Zm00001d048784_P001 | Maize | cytosol | 40.62 | 59.74 |
| TraesCS5B01G111900.1 | Wheat | cytosol | 31.57 | 59.34 |
| GSMUA_Achr6P06710_001 | Banana | nucleus | 60.04 | 59.13 |
| Os01t0908700-01 | Rice | plasma membrane, plastid | 58.06 | 58.97 |
| GSMUA_Achr8P01300_001 | Banana | nucleus | 56.29 | 58.76 |
| EES04073 | Sorghum | nucleus | 58.94 | 58.17 |
| GSMUA_Achr9P29460_001 | Banana | nucleus | 59.16 | 57.27 |
| TraesCS3D01G408900.1 | Wheat | cytosol | 58.72 | 57.08 |
| TraesCS3B01G449200.1 | Wheat | cytosol | 58.5 | 56.75 |
| AT5G63970.1 | Thale cress | cytosol | 45.92 | 56.68 |
| AT3G01650.2 | Thale cress | cytosol | 60.26 | 55.83 |
| Zm00001d042437_P005 | Maize | cytosol | 57.62 | 55.3 |
| TraesCS3A01G414400.2 | Wheat | cytosol | 51.66 | 53.67 |
| AT1G79380.1 | Thale cress | mitochondrion | 46.58 | 52.62 |
| Zm00001d012101_P002 | Maize | mitochondrion | 58.94 | 52.56 |
| AT1G24545.1 | Thale cress | cytosol | 19.65 | 48.9 |
| TraesCS5D01G122000.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 57.84 | 48.79 |
| HORVU5Hr1G039100.3 | Barley | endoplasmic reticulum, extracellular, golgi | 57.4 | 48.24 |
| Os12t0288400-01 | Rice | endoplasmic reticulum, extracellular, vacuole | 58.06 | 48.17 |
| Zm00001d041073_P001 | Maize | endoplasmic reticulum, golgi, vacuole | 57.4 | 48.06 |
| TraesCS5A01G103800.2 | Wheat | endoplasmic reticulum, extracellular, golgi | 57.62 | 46.69 |
| HORVU3Hr1G092250.6 | Barley | plastid | 55.63 | 45.41 |
| OQU79014 | Sorghum | plastid | 51.66 | 44.23 |
| AT5G07300.1 | Thale cress | cytosol | 21.19 | 16.38 |
| AT5G61900.3 | Thale cress | cytosol | 20.53 | 16.09 |
| AT1G08860.1 | Thale cress | cytosol | 20.31 | 15.75 |
| AT5G61910.4 | Thale cress | cytosol | 20.75 | 6.98 |
Protein Annotations
| MapMan:19.2.2.1.5.3.2 | MapMan:19.2.2.1.6.2 | Gene3D:3.30.40.10 | EntrezGene:843106 | ProteinID:AEE34698.1 | ArrayExpress:AT1G67800 |
| EnsemblPlantsGene:AT1G67800 | RefSeq:AT1G67800 | TAIR:AT1G67800 | RefSeq:AT1G67800-TAIR-G | EnsemblPlants:AT1G67800.2 | TAIR:AT1G67800.2 |
| Unigene:At.16850 | InterPro:Copine | UniProt:F4HTR6 | InterPro:IPR001841 | InterPro:IPR002035 | InterPro:IPR013083 |
| InterPro:IPR036465 | RefSeq:NP_849857.1 | PFAM:PF07002 | PFAM:PF13920 | PO:PO:0000013 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50089 | PANTHER:PTHR10857 |
| PANTHER:PTHR10857:SF28 | SMART:SM00327 | SUPFAM:SSF53300 | SUPFAM:SSF57850 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI0000197141 | InterPro:VWF_A | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | InterPro:vWFA_dom_sf |
Description
Copine (Calcium-dependent phospholipid-binding protein) family [Source:UniProtKB/TrEMBL;Acc:F4HTR6]
Coordinates
chr1:-:25420646..25423664
Molecular Weight (calculated)
49989.5 Da
IEP (calculated)
5.628
GRAVY (calculated)
-0.354
Length
453 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEVLQAIVL FILFWVWLSW MGGSSSKESP RGGGSGRRYE RSVSGSSSYS SAWDQSSYYQ TPNHPSASPV SSYNSGRQTP KNLERKYSRI ADNYRSIDEV
101: TAALSHAGLE SSNLIVGIDV TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM
201: CYREIVPQLR LSGPTSFAPI IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA
301: RAFDNFQFVN FTDIMSKNID PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST
401: THNESQQQFC PVCLVSAKNM AFNCGHQTCA GCGEDLHVCP ICRSSISVRI KLY
101: TAALSHAGLE SSNLIVGIDV TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM
201: CYREIVPQLR LSGPTSFAPI IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA
301: RAFDNFQFVN FTDIMSKNID PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST
401: THNESQQQFC PVCLVSAKNM AFNCGHQTCA GCGEDLHVCP ICRSSISVRI KLY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.