Factsheet for TraesCS3D01G408900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G449200.1	Wheat	cytosol	98.5	98.29
TraesCS3A01G414400.2	Wheat	cytosol	89.27	95.41
Os01t0908700-01	Rice	plasma membrane, plastid	84.98	88.79
EES04073	Sorghum	nucleus	83.05	84.31
Zm00001d042437_P005	Maize	cytosol	83.26	82.2
HORVU3Hr1G092250.6	Barley	plastid	90.99	76.4
Zm00001d012101_P002	Maize	mitochondrion	82.83	75.98
Zm00001d048784_P001	Maize	cytosol	47.64	72.08
GSMUA_Achr9P29460_001	Banana	nucleus	71.89	71.58
GSMUA_Achr8P01300_001	Banana	nucleus	66.09	70.97
VIT_01s0137g00460.t01	Wine grape	nucleus	64.59	68.1
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	61.8	67.29
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	62.45	67.21
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	61.16	66.74
KRG94356	Soybean	nucleus	60.73	66.12
Bra032793.1-P	Field mustard	nucleus	53.86	65.71
CDX84957	Canola	cytosol	54.08	65.45
CDY27584	Canola	cytosol	32.4	65.09
Solyc03g111870.2.1	Tomato	nucleus	60.3	64.3
CDX85597	Canola	cytosol, plastid	61.16	63.19
Bra023465.1-P	Field mustard	cytosol, plastid	61.16	63.19
VIT_14s0066g00290.t01	Wine grape	mitochondrion	62.45	63.12
KRH43098	Soybean	endoplasmic reticulum, golgi	62.23	63.04
CDX91062	Canola	cytosol, plastid	60.94	62.83
KRH59243	Soybean	endoplasmic reticulum, golgi	61.8	62.61
CDY09854	Canola	nucleus, plastid	62.02	62.02
Bra008758.1-P	Field mustard	nucleus	62.02	62.02
CDX69581	Canola	nucleus, plastid	62.02	62.02
Bra039105.1-P	Field mustard	nucleus	60.52	61.84
CDY49066	Canola	cytosol	60.94	61.74
CDX74310	Canola	cytosol	60.52	61.57
Bra000997.1-P	Field mustard	nucleus	60.52	61.57
CDX70564	Canola	cytosol, plastid	62.23	61.57
CDY37509	Canola	cytosol	60.73	61.52
Solyc02g093520.2.1	Tomato	nucleus	64.81	61.38
AT5G14420.2	Thale cress	nucleus, plastid	61.59	61.32
CDY01855	Canola	cytosol, plastid	57.94	61.22
CDX91935	Canola	cytosol	59.87	61.05
KRG97516	Soybean	golgi, plasma membrane	60.09	61.0
Bra006253.1-P	Field mustard	nucleus, plastid	61.59	60.93
CDX78576	Canola	cytosol, plastid	61.59	60.93
Bra004260.1-P	Field mustard	plastid	57.51	60.77
CDY56212	Canola	plastid	57.3	60.54
KRH58251	Soybean	nucleus	63.73	60.49
KRG93947	Soybean	nucleus	63.73	59.88
PGSC0003DMT400032842	Potato	mitochondrion	62.23	59.67
KRH31355	Soybean	golgi, plasma membrane	59.23	59.61
TraesCS7D01G377600.1	Wheat	plastid	57.73	58.86
AT1G67800.2	Thale cress	plasma membrane	57.08	58.72
AT3G01650.2	Thale cress	cytosol	60.73	57.87
TraesCS7D01G377500.1	Wheat	plastid	55.58	57.05
TraesCS3D01G510000.1	Wheat	cytosol	41.2	55.81
TraesCS7D01G305600.1	Wheat	mitochondrion	48.28	55.42
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	60.3	52.33
CDY27585	Canola	cytosol	14.59	52.31
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	39.48	50.83
TraesCS5D01G378400.2	Wheat	endoplasmic reticulum, extracellular	34.55	49.54
AT1G24545.1	Thale cress	cytosol	16.95	43.41
TraesCS3D01G509900.2	Wheat	cytosol	41.63	40.5
PGSC0003DMT400039186	Potato	cytosol	60.73	29.48
TraesCS6D01G057900.2	Wheat	cytosol	21.46	16.95
TraesCS1D01G236200.1	Wheat	cytosol	21.46	16.95
TraesCS6D01G176800.1	Wheat	cytosol, nucleus, plastid	19.31	15.68

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	InterPro:Copine	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857
PANTHER:PTHR10857:SF28	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS3D01G408900	EnsemblPlants:TraesCS3D01G408900.1
InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	TIGR:cd16729	SEG:seg	InterPro:vWFA_dom_sf

Description

No Description!

Coordinates

chr3D:-:523171294..523175428

Molecular Weight (calculated)

50231.8 Da

IEP (calculated)

5.928

GRAVY (calculated)

-0.422

Length

466 amino acids

Sequence
(BLAST)

001: MGGGHSRSES REGSGNGRYA HSASFQQPAA PHWGPPGAGG YPYGAGQDAQ GGYYGAPPQQ GGYAAPYPAY QPAPAAAQPP PARAGGANKP RLDRRYSRIA
101: DDFRSVEQVT DALAQAGLES SNLIVGIDFT KSNEWTGKFS FHGRSLHHIS NVPNPYEQGI SILGQTLSKF DEDNLIPCFG FGDASTHDQD VFCFYPDERP
201: CNGFSEALER YRELVPHLRL AGPTSFAPII EMAMTIVEQS GGQYHVLLII ADGQVTRSVD TASGQLSSQE QKTVDAIVRA SELPLSIVLV GVGDGPWDMM
301: KEFDDNIPAR AFDNFQFVNF SEIMSKNMPQ SRKEAAFALS ALMEIPQQYK ATVELGILGR RSMKAPERVP LPPPGGSHDA YSYGTKSFSK PQPSTSSSAY
401: PPYETAHSAA PAAPSSAYDN QVCPICLVNP KDMAFGCGHQ TCCECGQTLE SCPICRSPIT TRIKLY

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.