Factsheet for TraesCS5D01G378400.2

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G371300.1	Wheat	endoplasmic reticulum, vacuole	93.54	95.9
TraesCS5A01G368900.1	Wheat	endoplasmic reticulum, extracellular	89.23	91.77
HORVU5Hr1G091920.4	Barley	endoplasmic reticulum	88.62	81.36
EER98488	Sorghum	endoplasmic reticulum, golgi	65.23	67.73
Zm00001d005369_P001	Maize	mitochondrion	20.92	55.74
TraesCS7D01G305600.1	Wheat	mitochondrion	47.08	37.68
TraesCS3D01G510000.1	Wheat	cytosol	39.38	37.21
TraesCS7D01G377500.1	Wheat	plastid	49.85	35.68
TraesCS7D01G377600.1	Wheat	plastid	49.23	35.01
TraesCS3D01G408900.1	Wheat	cytosol	49.54	34.55
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	51.08	30.91
TraesCS3D01G509900.2	Wheat	cytosol	44.62	30.27
TraesCS6D01G057900.2	Wheat	cytosol	23.69	13.05
TraesCS1D01G236200.1	Wheat	cytosol	23.38	12.88
TraesCS6D01G176800.1	Wheat	cytosol, nucleus, plastid	21.54	12.2

Protein Annotations

EnsemblPlants:TraesCS5D01G378400.2	EnsemblPlantsGene:TraesCS5D01G378400	InterPro:Copine	InterPro:IPR036465	InterPro:vWFA_dom_sf	PANTHER:PTHR10857
PANTHER:PTHR10857:SF68	PFAM:PF07002	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF53300	MapMan:19.2.2.1.5.3.2
MapMan:19.2.2.1.6.2	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:449990773..449992606

Molecular Weight (calculated)

35512.1 Da

IEP (calculated)

6.175

GRAVY (calculated)

-0.204

Length

325 amino acids

Sequence
(BLAST)

001: MILSAFLLIC CAVATWTVSP AKARQSQSPS SEMGADHHQA YGTLDQVKAA LQRVGLESSN LIIGVDFTKS NQWTGKRCFG GRSLHDLAAG PNPYEEAIGI
101: VGDTLSAYDE DNAIPCFGFG DTSTHDQGVF SFYGDRRPCA GIPEALLRYR EIAATVQLSG PTSLAPIIEA AMGIVQRSGH QYHILLIIAD GQVINRHFCV
201: PRGCGAHRAS SPDESRSENY MEERTLQALI QASHFPLSIV LVGVGDGPWD DDQMRFHDGR RRFDNFQFVD FTKIMSAEMS RAEKGERFAL EALEKIPSQY
301: AAIISQRISD LAARAPARTP LPPPS

Best Arabidopsis Sequence Match ( AT3G01650.1 )
(BLAST)

001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY

Arabidopsis Description

RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.