Factsheet for TraesCS5A01G368900.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

plastid 2
endoplasmic reticulum 4
extracellular 4
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	plastid, secretory
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G371300.1	Wheat	endoplasmic reticulum, vacuole	90.82	90.54
TraesCS5D01G378400.2	Wheat	endoplasmic reticulum, extracellular	91.77	89.23
HORVU5Hr1G091920.4	Barley	endoplasmic reticulum	85.13	75.99
EER98488	Sorghum	endoplasmic reticulum, golgi	66.77	67.41
Zm00001d005369_P001	Maize	mitochondrion	21.84	56.56
TraesCS3A01G503400.1	Wheat	cytosol	47.78	39.53
TraesCS7A01G308900.1	Wheat	mitochondrion	48.42	38.15
TraesCS3A01G414400.2	Wheat	cytosol	51.27	37.16
TraesCS7A01G381200.1	Wheat	cytosol, plastid	50.0	35.83
TraesCS7A01G381300.1	Wheat	plastid	50.63	35.01
TraesCS3A01G503300.1	Wheat	cytosol	46.84	30.96
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	52.53	29.7
TraesCS1A01G236100.4	Wheat	cytosol	23.73	12.71
TraesCS6A01G058200.2	Wheat	cytosol, plastid	23.73	11.85
TraesCS6A01G189800.1	Wheat	cytosol	21.52	11.85
TraesCS7A01G414000.1	Wheat	cytosol	21.2	11.39

Protein Annotations

EnsemblPlants:TraesCS5A01G368900.1	EnsemblPlantsGene:TraesCS5A01G368900	InterPro:Copine	InterPro:IPR002035	InterPro:IPR036465	InterPro:VWF_A
InterPro:vWFA_dom_sf	PANTHER:PTHR10857	PANTHER:PTHR10857:SF68	PFAM:PF07002	SEG:seg	SignalP:SignalP-noTM
SMART:SM00327	SUPFAM:SSF53300	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	:	:

Description

No Description!

Coordinates

chr5A:+:569283169..569284992

Molecular Weight (calculated)

34720.0 Da

IEP (calculated)

4.959

GRAVY (calculated)

-0.214

Length

316 amino acids

Sequence
(BLAST)

001: MILSAFLLLC CAVATWTVSP AKGRQSQIES PSSEDHLAYG TLDQVKADLQ RVGLESSNLI IGVDFTRSNE WTGKRCFGGR SLHHLGAVPN PYEEAISIVG
101: ETLSAYDEDN DIPCFGFGDM STHDQGVFSF YGDVRPCAGI PEALLRYREI TATVQLSGPT SLAPIIEAAM GVVQRSGHQY HILLIIADGQ VPRGCGAHRA
201: SSLDESRSEN DMEERTLQAL IHASHFPLSI VLVGVGDGPW DDDQMPFHDG RRRFDNFQFV DFTKIMSTEM SRAEKEERFA LEALEKIPSQ YAAIVSQRIS
301: DLAARAPARR PLPPPS

Best Arabidopsis Sequence Match ( AT3G01650.1 )
(BLAST)

001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY

Arabidopsis Description

RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.