Factsheet for TraesCS3A01G503300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G509900.2	Wheat	cytosol	92.68	92.48
TraesCS3B01G566700.1	Wheat	cytosol	92.89	91.36
TraesCS3A01G503400.1	Wheat	cytosol	60.04	75.13
Os01t0960500-01	Rice	plasma membrane	57.95	71.58
GSMUA_Achr10P...	Banana	nucleus	49.16	61.52
HORVU3Hr1G110850.8	Barley	cytosol	42.26	58.05
VIT_04s0044g01620.t01	Wine grape	cytosol	44.14	57.49
CDX84471	Canola	cytosol, mitochondrion	43.31	57.02
Bra024254.1-P	Field mustard	mitochondrion	43.51	56.83
AT5G63970.1	Thale cress	cytosol	43.31	56.4
CDY43775	Canola	cytosol, mitochondrion	43.31	56.4
CDY31343	Canola	cytosol	43.1	56.13
CDY39835	Canola	cytosol	42.89	55.86
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	39.75	55.56
Solyc09g065870.2.1	Tomato	nucleus	48.12	54.76
KRH59596	Soybean	nucleus	47.07	52.82
KRH64018	Soybean	nucleus	46.86	51.85
GSMUA_Achr5P25940_001	Banana	cytosol	21.97	48.39
TraesCS7A01G308900.1	Wheat	mitochondrion	39.54	47.13
TraesCS5A01G368900.1	Wheat	endoplasmic reticulum, extracellular	30.96	46.84
TraesCS7A01G381200.1	Wheat	cytosol, plastid	40.38	43.76
KRH40948	Soybean	nucleus	32.22	43.14
TraesCS7A01G381300.1	Wheat	plastid	39.12	40.92
KRH53919	Soybean	nucleus	30.54	38.93
TraesCS3A01G414400.2	Wheat	cytosol	35.15	38.53
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	41.42	35.42
TraesCS6A01G189800.1	Wheat	cytosol	16.11	13.41
TraesCS1A01G236100.4	Wheat	cytosol	16.53	13.39
TraesCS6A01G058200.2	Wheat	cytosol, plastid	16.95	12.8
TraesCS7A01G414000.1	Wheat	cytosol	14.02	11.39

Protein Annotations

EnsemblPlants:TraesCS3A01G503300.1	EnsemblPlantsGene:TraesCS3A01G503300	Gene3D:3.30.40.10	InterPro:Copine	InterPro:IPR001841	InterPro:IPR013083
InterPro:IPR036465	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:vWFA_dom_sf	PANTHER:PTHR10857	PANTHER:PTHR10857:SF104
PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF53300
SUPFAM:SSF57850	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	:	:	:

Description

No Description!

Coordinates

chr3A:-:726103495..726107531

Molecular Weight (calculated)

53299.1 Da

IEP (calculated)

3.901

GRAVY (calculated)

-0.490

Length

478 amino acids

Sequence
(BLAST)

001: MWGWGKQEKA RDTRSSSTMW GWGEEEEEEE EAHDEHATRS SPTMWDEDEE TDDEHDTRSP PTSWDENTDD EDVPSESSED VPSGSSDDVP SGSSEEVPSG
101: SSEEGEPMYN YSTVDEVITA LREAGLESSN LIFGIDFTKS NDWSGKHSFG GESLHAISRT PNPYEQAISI IGRTLSPFDD DNLIPCFGFG DVSTCDHSVF
201: SFYEDYRPCC GFEEVLDRYK QMIPYLELSG PTSFAPLIYA AISVVENSNY QHHVLVIIAD GQATTSNSYS IVSPQEEATI QALIDASFYP LSIVMVGVGD
301: GPWDEMQPAD ECIPSRAFYN FQFVNFTDIM STSKDMEKKE AAFAFAALME IPTQYKAAQG LLPPEWHEEM ADPWMILPPP IEVLERDDAV AATYAPATIF
401: QLTDVGNDAL DEQVCPICLR NPKDMAFQCG HLTCRECGPT LSTCPVCRVP ITHEALLVRR ARPSEAEDPP FHPIWYQE

Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)

001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T

Arabidopsis Description

RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.