Factsheet for VIT_04s0044g01620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84471	Canola	cytosol, mitochondrion	66.76	67.49
CDY31343	Canola	cytosol	67.3	67.3
CDY39835	Canola	cytosol	67.03	67.03
CDY43775	Canola	cytosol, mitochondrion	66.76	66.76
Bra024254.1-P	Field mustard	mitochondrion	66.48	66.67
AT5G63970.1	Thale cress	cytosol	66.21	66.21
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	61.58	66.08
Solyc09g065870.2.1	Tomato	nucleus	74.39	65.0
GSMUA_Achr10P...	Banana	nucleus	66.76	64.14
TraesCS3B01G566800.1	Wheat	cytosol	65.4	63.32
KXG34172	Sorghum	nucleus	66.48	63.05
TraesCS3A01G503400.1	Wheat	cytosol	65.4	62.83
Os01t0960500-01	Rice	plasma membrane	65.12	61.76
TraesCS3D01G510000.1	Wheat	cytosol	57.77	61.63
GSMUA_Achr5P25930_001	Banana	extracellular	38.96	60.34
KRH59596	Soybean	nucleus	69.75	60.09
KRH64018	Soybean	nucleus	70.57	59.95
VIT_19s0085g01000.t01	Wine grape	extracellular	58.86	56.1
Zm00001d011821_P007	Maize	cytosol	63.76	54.55
Zm00001d006136_P001	Maize	cytosol	14.17	53.61
GSMUA_Achr5P25940_001	Banana	cytosol	31.06	52.53
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	61.58	52.19
VIT_01s0137g00460.t01	Wine grape	nucleus	61.31	50.91
KRH40948	Soybean	nucleus	49.32	50.7
HORVU3Hr1G110870.14	Barley	mitochondrion	62.67	48.22
VIT_00s0780g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	57.22	48.05
VIT_14s0066g00290.t01	Wine grape	mitochondrion	60.22	47.94
HORVU3Hr1G110850.8	Barley	cytosol	43.6	45.98
KRH53919	Soybean	nucleus	46.32	45.33
TraesCS3D01G509900.2	Wheat	cytosol	57.77	44.26
TraesCS3A01G503300.1	Wheat	cytosol	57.49	44.14
TraesCS3B01G566700.1	Wheat	cytosol	56.4	42.59
VIT_18s0001g15760.t01	Wine grape	cytosol, extracellular	8.45	32.29
VIT_18s0072g00560.t01	Wine grape	peroxisome	13.08	28.57
VIT_14s0030g00540.t01	Wine grape	cytosol	20.44	16.38
VIT_14s0030g00550.t01	Wine grape	cytosol	20.44	15.69
VIT_14s0030g00600.t01	Wine grape	cytosol	20.44	14.42
VIT_17s0000g00210.t01	Wine grape	cytosol	21.53	13.72
VIT_12s0121g00080.t01	Wine grape	cytosol	20.71	12.77
VIT_14s0030g00500.t01	Wine grape	cytosol	20.44	12.63
VIT_14s0030g00570.t01	Wine grape	cytosol	20.71	11.39

Protein Annotations

EntrezGene:100249896	wikigene:100249896	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	ProteinID:CBI37513
ProteinID:CBI37513.3	InterPro:Copine	UniProt:D7U4B6	EMBL:FN596506	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009605	GO:GO:0009607	GO:GO:0009611	GO:GO:0009719	GO:GO:0009867	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0042742	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	EntrezGene:LOC100249896	wikigene:LOC100249896	PFAM:PF07002	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF104	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300
SUPFAM:SSF57850	TIGR:TC64074	TIGR:TC66890	UniParc:UPI0001BE474C	ArrayExpress:VIT_04s0044g01620	EnsemblPlantsGene:VIT_04s0044g01620
EnsemblPlants:VIT_04s0044g01620.t01	InterPro:VWF_A	unigene:Vvi.968	RefSeq:XP_002266834	RefSeq:XP_002266834.1	RefSeq:XP_003631930
RefSeq:XP_003631930.1	RefSeq:XP_003631931	RefSeq:XP_003631931.1	RefSeq:XP_019075064.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:23278044..23287849

Molecular Weight (calculated)

40824.3 Da

IEP (calculated)

4.895

GRAVY (calculated)

-0.257

Length

367 amino acids

Sequence
(BLAST)

001: MDPDYRHRGQ LPYIADNFNS LDQVTDALRE SGLESSNLIL GIDFTKSNEW TGRHSFHRKS LHAISNTPNP YEQAISIIGR TLSPFDEDNL IPCFGFGDAS
101: THDKYVFSFY PDHRYCRGFE EVLARYKEIV PYLKLSGPTS FAPIIDAAID IVEGSNGQYH VLVIIADGQV SGSLDGSSGR FSPQEQATVN SIVAASRYPL
201: SIILVGVGDG PWDAMKLFDD NIPQRSFDNF QFVDFSKIMS ENMEASKKET AFALSALMEI PFQYRATLRL QSIDNNLVGG PRTRPLPPPQ EVLDHDREAL
301: QHMMATTLSV EAVEQTAPVD QVCPICLTNP KNMAFGCGHL TCKECGESIS LCPLCREPIN TRLKLYS

Best Arabidopsis Sequence Match ( AT5G63970.2 )
(BLAST)

001: MNMSNKRNQQ PSYIADHFSS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRYSFNRKS LHAIGKRQNP YEKAISIIGR TLSPFDEDDL IPCFGFGDVT
101: TRDQYVFSFY PENKSCDGLE NAVKRYREIV PHLKLSGPTS FAPVIDAAIN IVEQNNMQYH VLVIIADGQV TRNPDVPLGR LSPQEEATMN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHREFDNF QFVNFTKIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL NRKPVRSSHQ HHKPLPPPPE VIERDNAVRS
301: VPNQMTETAE KSDRLAPSTV PVCPICLTNP KDMAFSCGHT TCKECGVVIT TCPLCRQPIT TRIRLYT

Arabidopsis Description

RGLG3E3 ubiquitin-protein ligase RGLG3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.