Factsheet for Zm00001d011821_P007

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34172	Sorghum	nucleus	83.92	93.02
TraesCS3D01G510000.1	Wheat	cytosol	67.83	84.59
TraesCS3B01G566800.1	Wheat	cytosol	73.66	83.38
TraesCS3A01G503400.1	Wheat	cytosol	73.89	82.98
Zm00001d006136_P001	Maize	cytosol	16.08	71.13
GSMUA_Achr10P...	Banana	nucleus	61.77	69.37
VIT_04s0044g01620.t01	Wine grape	cytosol	54.55	63.76
CDX84471	Canola	cytosol, mitochondrion	53.61	63.36
HORVU3Hr1G110870.14	Barley	mitochondrion	70.4	63.31
Bra024254.1-P	Field mustard	mitochondrion	53.85	63.11
CDY43775	Canola	cytosol, mitochondrion	53.61	62.67
AT5G63970.1	Thale cress	cytosol	52.68	61.58
CDY39835	Canola	cytosol	52.21	61.04
CDY31343	Canola	cytosol	52.21	61.04
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	47.79	59.94
Solyc09g065870.2.1	Tomato	nucleus	55.71	56.9
KRH59596	Soybean	nucleus	55.24	55.63
KRH64018	Soybean	nucleus	55.94	55.56
Zm00001d035211_P001	Maize	mitochondrion	48.95	51.98
GSMUA_Achr5P25940_001	Banana	cytosol	25.87	51.15
Zm00001d048784_P001	Maize	cytosol	35.66	49.68
Zm00001d024705_P001	Maize	cytosol	10.49	47.87
Zm00001d046554_P003	Maize	cytosol, plastid	49.18	47.42
KRH40948	Soybean	nucleus	38.93	46.78
Zm00001d042437_P005	Maize	cytosol	49.18	44.7
Zm00001d036831_P006	Maize	cytosol	46.15	43.23
Zm00001d034150_P001	Maize	cytosol	17.02	43.2
Zm00001d012101_P002	Maize	mitochondrion	50.58	42.72
KRH53919	Soybean	nucleus	37.06	42.4
Zm00001d041244_P001	Maize	extracellular	10.49	42.06
Zm00001d005369_P001	Maize	mitochondrion	11.42	40.16
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	47.32	37.52
Zm00001d037872_P001	Maize	plasma membrane	18.88	13.75
Zm00001d016615_P002	Maize	plasma membrane	15.85	12.5

Protein Annotations

EntrezGene:100501644	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	UniProt:A0A1D6G420	ProteinID:AQK98079.1
InterPro:Copine	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF104
SMART:SM00184	SUPFAM:SSF53300	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000842F39A	EnsemblPlantsGene:Zm00001d011821
EnsemblPlants:Zm00001d011821_P007	EnsemblPlants:Zm00001d011821_T007	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf

Description

Copine (Calcium-dependent phospholipid-binding protein) family

Coordinates

chr8:+:162133371..162138282

Molecular Weight (calculated)

46936.9 Da

IEP (calculated)

6.778

GRAVY (calculated)

-0.135

Length

429 amino acids

Sequence
(BLAST)

001: MWGERTHHKH WHQGHGTSGN SNNKKHDKRQ PKFIPDNYSS VDEVTTALRE AGLESSNLIL GIDFTKSNEW SGRHSFRRKS LHAINGTPNP YEQAISIIGR
101: TLSPFDDDNL IPCFGFGDAS THDHSVFSFY PENRPCRGFE EVLVSEILVA SSITGSTGLW LCVAYSLVQL CAGPTSFAPL IYAAISVVEN SNWQYHVLVI
201: IADGQVTAAN INDGRLSPQE QATIQAIVDA SYYPLSIVMV GVGDGPWDAM QHFDDCIPER AFDNFQYPVL AIVLVPVIVL HKVVNILIIP FVNFTGIMST
301: SKDMSKKEAA FALAALMEIP SQYKATQGLR PPEKQAQRIG SPRILPPPNK VLENDNAAAA ASHPPQTASS KSTGIGKSAA DEQVCPICLT NPKDMAFQCG
401: HLTCKECGPT LSTCPLCRAL ITMRVRLYS

Best Arabidopsis Sequence Match ( AT3G01650.1 )
(BLAST)

001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY

Arabidopsis Description

RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.