Factsheet for Zm00001d034150_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048784_P001	Maize	cytosol	45.56	25.0
Zm00001d042437_P005	Maize	cytosol	50.3	18.01
Zm00001d046554_P003	Maize	cytosol, plastid	46.75	17.75
Zm00001d011821_P007	Maize	cytosol	43.2	17.02
Zm00001d035211_P001	Maize	mitochondrion	40.24	16.83
Zm00001d036831_P006	Maize	cytosol	45.56	16.81
Zm00001d012101_P002	Maize	mitochondrion	50.3	16.73
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	47.93	14.97
Zm00001d005369_P001	Maize	mitochondrion	10.65	14.75
Zm00001d006136_P001	Maize	cytosol	6.51	11.34
Zm00001d041244_P001	Maize	extracellular	7.1	11.21
Zm00001d037872_P001	Maize	plasma membrane	23.08	6.62
Zm00001d024705_P001	Maize	cytosol	3.55	6.38
Zm00001d016615_P002	Maize	plasma membrane	20.12	6.25

Protein Annotations

MapMan:35.1	UniProt:A0A1D6L5R0	InterPro:Copine	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784
GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016874	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036324	InterPro:Mn/Fe_SOD_N
InterPro:Mn/Fe_SOD_N_sf	ProteinID:ONM09641.1	PFAM:PF00081	PFAM:PF07002	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28
SUPFAM:SSF46609	UniParc:UPI0008455452	EnsemblPlantsGene:Zm00001d034150	EnsemblPlants:Zm00001d034150_P001	EnsemblPlants:Zm00001d034150_T001	:

Description

E3 ubiquitin-protein ligase RGLG1

Coordinates

chr1:-:285138708..285141599

Molecular Weight (calculated)

18785.7 Da

IEP (calculated)

8.189

GRAVY (calculated)

-0.159

Length

169 amino acids

Sequence
(BLAST)

001: MIMYANSPSN TPNPYEQGIS IIGRTLSKFD EDNLIPCFGF GDASTHDQDV FVSLLTRNLV MDLKKLLDNA GNLINTLCTN VKQSGGQYQV LLIIADGKDA
101: MAALPRSPNS ARLPLSLRDA RWIGESMAAW QGGLSQRFLK VVSYYGLTTL PYKLDALEPY MRKRTVELH

Best Arabidopsis Sequence Match ( AT3G01650.1 )
(BLAST)

001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY

Arabidopsis Description

RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.