Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d005369_P001 | Maize | mitochondrion | 36.45 | 31.97 |
| Zm00001d006136_P001 | Maize | cytosol | 28.97 | 31.96 |
| Zm00001d046554_P003 | Maize | cytosol, plastid | 46.73 | 11.24 |
| Zm00001d035211_P001 | Maize | mitochondrion | 42.06 | 11.14 |
| Zm00001d048784_P001 | Maize | cytosol | 31.78 | 11.04 |
| Zm00001d042437_P005 | Maize | cytosol | 47.66 | 10.81 |
| Zm00001d011821_P007 | Maize | cytosol | 42.06 | 10.49 |
| Zm00001d036831_P006 | Maize | cytosol | 44.86 | 10.48 |
| Zm00001d012101_P002 | Maize | mitochondrion | 47.66 | 10.04 |
| Zm00001d041073_P001 | Maize | endoplasmic reticulum, golgi, vacuole | 44.86 | 8.87 |
| Zm00001d034150_P001 | Maize | cytosol | 11.21 | 7.1 |
| Zm00001d037872_P001 | Maize | plasma membrane | 25.23 | 4.58 |
| Zm00001d016615_P002 | Maize | plasma membrane | 21.5 | 4.23 |
| Zm00001d024705_P001 | Maize | cytosol | 2.8 | 3.19 |
Protein Annotations
| EnsemblPlants:Zm00001d041244_P001 | EnsemblPlants:Zm00001d041244_T001 | EnsemblPlantsGene:Zm00001d041244 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016874 |
| InterPro:Copine | PANTHER:PTHR10857 | PANTHER:PTHR10857:SF68 | PFAM:PF07002 | ProteinID:ONM32718.1 | UniParc:UPI00084367F3 |
| UniProt:A0A1D6MV70 | MapMan:35.1 | : | : | : | : |
Description
E3 ubiquitin-protein ligase RGLG1
Coordinates
chr3:-:107893262..107893994
Molecular Weight (calculated)
12655.4 Da
IEP (calculated)
4.827
GRAVY (calculated)
0.009
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKQLVLSFL EKKLDVFLVF YSDFPLSIVL VGVGDGPWDN LIHFNDNRRW FDKFQFVDFI GIMLREMLQG DKEDEFTWEG LMKIPTQHDA IIIENVRIHN
101: VRCSTTM
101: VRCSTTM
001: MLEVLQAIVL FILFWVWLSW MGGSSSKESP RGGGSGRRYE RSVSGSSSYS SAWDQSSYYQ TPNHPSASPV SSYNSGRQTP KNLERKYSRI ADNYRSIDEV
101: TAALSHAGLE SSNLIVGIDV TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM
201: CYREIVPQLR LSGPTSFAPI IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA
301: RAFDNFQFVN FTDIMSKNID PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST
401: THNESQV
101: TAALSHAGLE SSNLIVGIDV TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM
201: CYREIVPQLR LSGPTSFAPI IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA
301: RAFDNFQFVN FTDIMSKNID PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST
401: THNESQV
Arabidopsis Description
Copine (Calcium-dependent phospholipid-binding protein) family [Source:UniProtKB/TrEMBL;Acc:F4HTR6]
SUBAcon: [plasma membrane,golgi,vacuole]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.