Factsheet for Zm00001d006136_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041244_P001	Maize	extracellular	31.96	28.97
Zm00001d005369_P001	Maize	mitochondrion	25.77	20.49
TraesCS3D01G510000.1	Wheat	cytosol	65.98	18.6
KXG34172	Sorghum	nucleus	70.1	17.57
TraesCS3B01G566800.1	Wheat	cytosol	68.04	17.41
TraesCS3A01G503400.1	Wheat	cytosol	68.04	17.28
Zm00001d011821_P007	Maize	cytosol	71.13	16.08
GSMUA_Achr10P...	Banana	nucleus	59.79	15.18
AT5G63970.1	Thale cress	cytosol	55.67	14.71
CDX84471	Canola	cytosol, mitochondrion	54.64	14.6
Bra024254.1-P	Field mustard	mitochondrion	54.64	14.48
CDY43775	Canola	cytosol, mitochondrion	54.64	14.44
CDY39835	Canola	cytosol	54.64	14.44
CDY31343	Canola	cytosol	54.64	14.44
VIT_04s0044g01620.t01	Wine grape	cytosol	53.61	14.17
HORVU3Hr1G110870.14	Barley	mitochondrion	63.92	13.0
Solyc09g065870.2.1	Tomato	nucleus	54.64	12.62
KRH59596	Soybean	nucleus	54.64	12.44
Zm00001d046554_P003	Maize	cytosol, plastid	55.67	12.13
Zm00001d035211_P001	Maize	mitochondrion	50.52	12.13
Zm00001d036831_P006	Maize	cytosol	53.61	11.35
KRH64018	Soybean	nucleus	50.52	11.34
Zm00001d042437_P005	Maize	cytosol	53.61	11.02
KRH53919	Soybean	nucleus	40.21	10.4
Zm00001d012101_P002	Maize	mitochondrion	53.61	10.24
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	36.08	10.23
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	54.64	9.8
Zm00001d048784_P001	Maize	cytosol	26.8	8.44
KRH40948	Soybean	nucleus	29.9	8.12
Zm00001d034150_P001	Maize	cytosol	11.34	6.51
GSMUA_Achr5P25940_001	Banana	cytosol	7.22	3.23
Zm00001d037872_P001	Maize	plasma membrane	14.43	2.38
Zm00001d016615_P002	Maize	plasma membrane	9.28	1.65
Zm00001d024705_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d006136_P001	EnsemblPlants:Zm00001d006136_T001	EnsemblPlantsGene:Zm00001d006136	InterPro:Copine	PANTHER:PTHR10857	PANTHER:PTHR10857:SF104
PFAM:PF07002	ProteinID:ONM22880.1	UniParc:UPI0008436FE0	UniProt:A0A1D6ET46	MapMan:35.1	:

Description

Copine (Calcium-dependent phospholipid-binding protein) family

Coordinates

chr2:-:199540273..199541992

Molecular Weight (calculated)

11180.3 Da

IEP (calculated)

4.107

GRAVY (calculated)

-0.134

Length

97 amino acids

Sequence
(BLAST)

1: MVGVGDGPWD AMQHFEDCIP ERSFDNFQFL AYWPSENLID ELLQFVNFTG IMSTSKDMSK KEVAFALAAL MEIPSQYKAT QGLRPPEYQF LLSYLWS

Best Arabidopsis Sequence Match ( AT5G63970.1 )
(BLAST)

001: MNMSNKRNQQ PSYIADHFSS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRYSFNRKS LHAIGKRQNP YEKAISIIGR TLSPFDEDDL IPCFGFGDVT
101: TRDQYVFSFY PENKSCDGLE NAVKRYREIV PHLKLSGPTS FAPVIDAAIN IVEQNNMQYH VLVIIADGQV TRNPDVPLGR LSPQEEATMN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHREFDNF QFVNFTKIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL NRKPVRSSHQ HHKPLPPPPE VIERDNAVRS
301: VPNQMTETAE KSDRLAPSTV PVCPICLTNP KDMAFSCGHT TCKECGVVIT TCPLCRQPIT TRIRLYT

Arabidopsis Description

RGLG3E3 ubiquitin-protein ligase RGLG3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.