Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G503400.1 | Wheat | cytosol | 71.2 | 71.2 |
| TraesCS3B01G566800.1 | Wheat | cytosol | 70.42 | 70.98 |
| TraesCS3D01G510000.1 | Wheat | cytosol | 63.61 | 70.64 |
| KXG34172 | Sorghum | nucleus | 71.47 | 70.54 |
| Os01t0960500-01 | Rice | plasma membrane | 69.11 | 68.22 |
| CDX84471 | Canola | cytosol, mitochondrion | 63.61 | 66.94 |
| Bra024254.1-P | Field mustard | mitochondrion | 64.14 | 66.94 |
| VIT_04s0044g01620.t01 | Wine grape | cytosol | 64.14 | 66.76 |
| CDY43775 | Canola | cytosol, mitochondrion | 63.87 | 66.48 |
| AT5G63970.1 | Thale cress | cytosol | 63.87 | 66.48 |
| CDY31343 | Canola | cytosol | 63.35 | 65.94 |
| CDY39835 | Canola | cytosol | 63.35 | 65.94 |
| Bra031942.1-P | Field mustard | cytosol, mitochondrion, nucleus | 58.12 | 64.91 |
| GSMUA_Achr5P25930_001 | Banana | extracellular | 38.48 | 62.03 |
| Zm00001d011821_P007 | Maize | cytosol | 69.37 | 61.77 |
| Solyc09g065870.2.1 | Tomato | nucleus | 65.97 | 60.0 |
| Zm00001d006136_P001 | Maize | cytosol | 15.18 | 59.79 |
| KRH64018 | Soybean | nucleus | 65.44 | 57.87 |
| KRH59596 | Soybean | nucleus | 63.61 | 57.04 |
| GSMUA_Achr7P20180_001 | Banana | cytosol, nucleus, plastid | 26.44 | 56.42 |
| GSMUA_Achr2P05470_001 | Banana | nucleus | 55.24 | 56.42 |
| GSMUA_Achr5P25940_001 | Banana | cytosol | 31.15 | 54.84 |
| GSMUA_Achr7P03440_001 | Banana | cytosol | 44.76 | 54.63 |
| HORVU3Hr1G110870.14 | Barley | mitochondrion | 67.28 | 53.88 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 57.59 | 52.88 |
| GSMUA_Achr9P12830_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 54.97 | 51.34 |
| KRH40948 | Soybean | nucleus | 46.6 | 49.86 |
| GSMUA_Achr8P01300_001 | Banana | nucleus | 56.54 | 49.77 |
| TraesCS3A01G503300.1 | Wheat | cytosol | 61.52 | 49.16 |
| TraesCS3D01G509900.2 | Wheat | cytosol | 60.99 | 48.64 |
| HORVU3Hr1G110850.8 | Barley | cytosol | 44.24 | 48.56 |
| GSMUA_Achr4P09310_001 | Banana | endoplasmic reticulum, golgi | 46.86 | 48.51 |
| TraesCS3B01G566700.1 | Wheat | cytosol | 59.95 | 47.12 |
| GSMUA_Achr9P29460_001 | Banana | nucleus | 57.59 | 47.01 |
| GSMUA_Achr6P06710_001 | Banana | nucleus | 56.28 | 46.74 |
| KRH53919 | Soybean | nucleus | 42.93 | 43.73 |
| GSMUA_AchrUn_... | Banana | cytosol | 10.73 | 22.04 |
| GSMUA_AchrUn_... | Banana | cytosol, golgi, plastid | 20.42 | 17.81 |
| GSMUA_Achr5P08050_001 | Banana | cytosol | 21.99 | 14.14 |
Protein Annotations
| MapMan:19.2.2.1.5.3.2 | MapMan:19.2.2.1.6.2 | Gene3D:3.30.40.10 | InterPro:Copine | EnsemblPlantsGene:GSMUA_Achr10G09880_001 | EnsemblPlants:GSMUA_Achr10P09880_001 |
| EnsemblPlants:GSMUA_Achr10T09880_001 | InterPro:IPR001841 | InterPro:IPR002035 | InterPro:IPR013083 | InterPro:IPR036465 | UniProt:M0RGW4 |
| PFAM:PF07002 | PFAM:PF13920 | PFscan:PS50089 | PANTHER:PTHR10857 | PANTHER:PTHR10857:SF104 | SMART:SM00184 |
| SMART:SM00327 | SUPFAM:SSF53300 | SUPFAM:SSF57850 | UniParc:UPI000296042B | InterPro:VWF_A | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | InterPro:vWFA_dom_sf | : | : | : |
Description
E3 ubiquitin-protein ligase RGLG1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G09880_001]
Coordinates
chr10:+:19525442..19532188
Molecular Weight (calculated)
42267.2 Da
IEP (calculated)
7.044
GRAVY (calculated)
-0.341
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MKPHTHLHHS HHHSRSSKGS KGHDGKQAKF IPDNFSSLDQ VISALRESGL ESSNLILGID FTKSNEWTGR NSFGRRSLHA IGGTPNPYEQ AISIIGRTLS
101: PFDEDNLIPC YGFGDTSTRE QSVFSFYPDN RPCHGFEEAL ARYRDIVPHL KLSGPTSFAP VIQASIDIVK KSNWQYHVLV IIADGQVARN SDVPQGRLSP
201: QEGATMKAIV DASFFPLSII MVGVGDGPWD TMEHFDDCIP ERRFDNFQFV NFTNIMSAKM EMSKKEAAFA LAALMEIPFQ YKATQGLRPQ ENQSDRFSSP
301: KILPPPKEVL EHDSLMMSST RIADTQTAGS TASTEQVCPI CLTNPKDMAF GCGHLTCKEC GATLSTCPIC RAPITTRLRL FA
101: PFDEDNLIPC YGFGDTSTRE QSVFSFYPDN RPCHGFEEAL ARYRDIVPHL KLSGPTSFAP VIQASIDIVK KSNWQYHVLV IIADGQVARN SDVPQGRLSP
201: QEGATMKAIV DASFFPLSII MVGVGDGPWD TMEHFDDCIP ERRFDNFQFV NFTNIMSAKM EMSKKEAAFA LAALMEIPFQ YKATQGLRPQ ENQSDRFSSP
301: KILPPPKEVL EHDSLMMSST RIADTQTAGS TASTEQVCPI CLTNPKDMAF GCGHLTCKEC GATLSTCPIC RAPITTRLRL FA
001: MNMSNKRNQQ PSYIADHFSS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRYSFNRKS LHAIGKRQNP YEKAISIIGR TLSPFDEDDL IPCFGFGDVT
101: TRDQYVFSFY PENKSCDGLE NAVKRYREIV PHLKLSGPTS FAPVIDAAIN IVEQNNMQYH VLVIIADGQV TRNPDVPLGR LSPQEEATMN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHREFDNF QFVNFTKIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL NRKPVRSSHQ HHKPLPPPPE VIERDNAVRS
301: VPNQMTETAE KSDRLAPSTV PVCPICLTNP KDMAFSCGHT TCKECGVVIT TCPLCRQPIT TRIRLYT
101: TRDQYVFSFY PENKSCDGLE NAVKRYREIV PHLKLSGPTS FAPVIDAAIN IVEQNNMQYH VLVIIADGQV TRNPDVPLGR LSPQEEATMN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHREFDNF QFVNFTKIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL NRKPVRSSHQ HHKPLPPPPE VIERDNAVRS
301: VPNQMTETAE KSDRLAPSTV PVCPICLTNP KDMAFSCGHT TCKECGVVIT TCPLCRQPIT TRIRLYT
Arabidopsis Description
RGLG3E3 ubiquitin-protein ligase RGLG3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX26]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.