Factsheet for HORVU3Hr1G110850.8

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0960500-01	Rice	plasma membrane	53.16	47.8
GSMUA_Achr10P...	Banana	nucleus	48.56	44.24
VIT_04s0044g01620.t01	Wine grape	cytosol	45.98	43.6
Bra024254.1-P	Field mustard	mitochondrion	45.11	42.9
CDX84471	Canola	cytosol, mitochondrion	44.54	42.7
CDY43775	Canola	cytosol, mitochondrion	44.83	42.51
TraesCS3A01G503300.1	Wheat	cytosol	58.05	42.26
AT5G63970.1	Thale cress	cytosol	44.54	42.23
CDY31343	Canola	cytosol	43.97	41.69
TraesCS3D01G509900.2	Wheat	cytosol	56.9	41.34
CDY39835	Canola	cytosol	42.82	40.6
TraesCS3B01G566700.1	Wheat	cytosol	56.32	40.33
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	38.79	39.47
HORVU3Hr1G110870.14	Barley	mitochondrion	53.74	39.2
Solyc09g065870.2.1	Tomato	nucleus	46.84	38.81
KRH59596	Soybean	nucleus	44.83	36.62
HORVU7Hr1G048620.13	Barley	cytosol	41.95	36.59
KRH64018	Soybean	nucleus	45.11	36.34
KRH53919	Soybean	nucleus	32.47	30.13
HORVU5Hr1G091920.4	Barley	endoplasmic reticulum	29.02	28.53
HORVU3Hr1G092250.6	Barley	plastid	43.1	27.03
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	40.8	26.35
KRH40948	Soybean	nucleus	27.01	26.33
GSMUA_Achr5P25940_001	Banana	cytosol	14.37	23.04
HORVU6Hr1G010680.1	Barley	cytosol	16.38	9.6
HORVU1Hr1G058000.10	Barley	cytosol	16.09	8.47
HORVU6Hr1G041140.14	Barley	mitochondrion	14.94	8.07

Protein Annotations

EnsemblPlants:HORVU3Hr1G110850.8	EnsemblPlantsGene:HORVU3Hr1G110850	InterPro:Copine	PANTHER:PTHR10857	PANTHER:PTHR10857:SF104	PFAM:PF07002
SEG:seg	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:682161196..682163965

Molecular Weight (calculated)

38595.9 Da

IEP (calculated)

4.398

GRAVY (calculated)

-0.014

Length

348 amino acids

Sequence
(BLAST)

001: XSIIGRTLSP FDDDNLIPCF GFGDVSTCDH SVFNFYEEDR PCRGFEEVLD RYKQMIPYLD FSGPTSFAPL IYAAISVVER SNFQYHVLVI IADGQAATSK
101: SYSILSPQEE ETIQALVDAS FYPLSIVMVG VGDGPWDEMK HVDDCIPDRA FHNFQFVNFT DIMSTSKDME KKEAALAFAA LMEIPAQYKA TQCLQPPEWH
201: EEMADPWMIL PPPIEVLERD YAVAVSHFPA APALSTGIGK DSSDEQVCPI CLMNPKDMAF QCGHLLSLPS AALTGVGKGT SDEQVGTFRL VVNPHHIHFF
301: YTHGFLLNSV FVKLVVMPHL LNESKGHGFP MWSSDMQGVW SDAIDLPP

Best Arabidopsis Sequence Match ( AT3G01650.1 )
(BLAST)

001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY

Arabidopsis Description

RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.