Factsheet for Bra024254.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43775	Canola	cytosol, mitochondrion	99.73	99.45
CDX84471	Canola	cytosol, mitochondrion	98.09	98.9
AT5G63970.1	Thale cress	cytosol	90.98	90.74
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	84.7	90.64
VIT_04s0044g01620.t01	Wine grape	cytosol	66.67	66.48
GSMUA_Achr10P...	Banana	nucleus	66.94	64.14
TraesCS3A01G503400.1	Wheat	cytosol	65.03	62.3
KXG34172	Sorghum	nucleus	65.57	62.02
TraesCS3D01G510000.1	Wheat	cytosol	58.2	61.92
Solyc09g065870.2.1	Tomato	nucleus	71.04	61.9
TraesCS3B01G566800.1	Wheat	cytosol	63.66	61.48
Os01t0960500-01	Rice	plasma membrane	64.75	61.24
KRH59596	Soybean	nucleus	70.77	60.8
GSMUA_Achr5P25930_001	Banana	extracellular	39.07	60.34
KRH64018	Soybean	nucleus	70.77	59.95
Bra032793.1-P	Field mustard	nucleus	57.38	54.97
Zm00001d006136_P001	Maize	cytosol	14.48	54.64
Zm00001d011821_P007	Maize	cytosol	63.11	53.85
GSMUA_Achr5P25940_001	Banana	cytosol	31.42	53.0
Bra035112.1-P	Field mustard	plastid	56.01	50.99
KRH40948	Soybean	nucleus	47.81	49.02
Bra023465.1-P	Field mustard	cytosol, plastid	60.38	49.0
Bra039105.1-P	Field mustard	nucleus	60.93	48.9
Bra000997.1-P	Field mustard	nucleus	60.38	48.25
Bra004260.1-P	Field mustard	plastid	57.92	48.07
Bra008758.1-P	Field mustard	nucleus	59.56	46.78
HORVU3Hr1G110870.14	Barley	mitochondrion	60.93	46.75
Bra006253.1-P	Field mustard	nucleus, plastid	60.11	46.71
KRH53919	Soybean	nucleus	46.72	45.6
HORVU3Hr1G110850.8	Barley	cytosol	42.9	45.11
TraesCS3A01G503300.1	Wheat	cytosol	56.83	43.51
TraesCS3D01G509900.2	Wheat	cytosol	56.83	43.42
TraesCS3B01G566700.1	Wheat	cytosol	55.74	41.98
Bra012681.1-P	Field mustard	cytosol	12.57	41.07
Bra018339.1-P	Field mustard	cytosol	15.03	37.16
Bra021976.1-P	Field mustard	plastid	26.23	25.81
Bra014181.1-P	Field mustard	plastid	24.59	23.68
Bra007134.1-P	Field mustard	mitochondrion	14.75	14.88
Bra009273.1-P	Field mustard	cytosol	22.4	13.92
Bra005931.1-P	Field mustard	cytosol	21.58	13.46
Bra010041.1-P	Field mustard	cytosol	21.31	13.45
Bra029301.1-P	Field mustard	cytosol, plastid	21.04	13.25
Bra031645.1-P	Field mustard	cytosol	19.95	12.52

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra024254	EnsemblPlants:Bra024254.1	EnsemblPlants:Bra024254.1-P
InterPro:Copine	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M4E650
PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF98	SMART:SM00184
SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000253F337	InterPro:VWF_A	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

AT5G63970 (E=1e-190) | copine-related

Coordinates

chrA06:-:14568754..14570625

Molecular Weight (calculated)

41224.2 Da

IEP (calculated)

7.110

GRAVY (calculated)

-0.370

Length

366 amino acids

Sequence
(BLAST)

001: MNRYNQRNQQ PSFIADHFHS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRHSFSRKS LHAIGKRQNP YEQAISIIGR TLSPFDEDDL IPCFGFGDVT
101: TRDQYVFSFY PENKSCDGFE NAVKRYREIV PHLKLSGPTS FAPIINAAID IVEQNNMQYH VLVIIADGQV TRNPDLPFGR LSPQEEATMN SIVAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHRKFDNF QFVNFTEIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL EKQVRASRLH HKPLPPPPEV IERDNAVRAV
301: PNPVTETAEK SERTAPVTQP VCPICLTKPK DMAFSCGHTT CKECGVVVKT CPMCRQPITT RIRLYT

Best Arabidopsis Sequence Match ( AT5G63970.2 )
(BLAST)

001: MNMSNKRNQQ PSYIADHFSS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRYSFNRKS LHAIGKRQNP YEKAISIIGR TLSPFDEDDL IPCFGFGDVT
101: TRDQYVFSFY PENKSCDGLE NAVKRYREIV PHLKLSGPTS FAPVIDAAIN IVEQNNMQYH VLVIIADGQV TRNPDVPLGR LSPQEEATMN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHREFDNF QFVNFTKIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL NRKPVRSSHQ HHKPLPPPPE VIERDNAVRS
301: VPNQMTETAE KSDRLAPSTV PVCPICLTNP KDMAFSCGHT TCKECGVVIT TCPLCRQPIT TRIRLYT

Arabidopsis Description

RGLG3E3 ubiquitin-protein ligase RGLG3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.