Factsheet for Bra006253.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78576	Canola	cytosol, plastid	99.15	99.15
Bra008758.1-P	Field mustard	nucleus	90.45	91.42
Bra023465.1-P	Field mustard	cytosol, plastid	87.26	91.13
AT5G14420.2	Thale cress	nucleus, plastid	88.32	88.89
Bra000997.1-P	Field mustard	nucleus	75.16	77.29
Bra039105.1-P	Field mustard	nucleus	73.67	76.1
VIT_14s0066g00290.t01	Wine grape	mitochondrion	67.09	68.55
KRG94356	Soybean	nucleus	62.21	68.46
Bra032793.1-P	Field mustard	nucleus	53.93	66.49
Bra004260.1-P	Field mustard	plastid	61.36	65.53
Zm00001d048784_P001	Maize	cytosol	42.25	64.61
TraesCS5B01G111900.1	Wheat	cytosol	32.91	64.32
Solyc02g093520.2.1	Tomato	nucleus	66.24	63.41
GSMUA_Achr9P29460_001	Banana	nucleus	62.21	62.61
Os01t0908700-01	Rice	plasma membrane, plastid	58.81	62.11
KRG93947	Soybean	nucleus	65.39	62.1
GSMUA_Achr8P01300_001	Banana	nucleus	57.11	61.98
KRH58251	Soybean	nucleus	64.54	61.91
TraesCS3B01G449200.1	Wheat	cytosol	61.15	61.67
TraesCS3D01G408900.1	Wheat	cytosol	60.93	61.59
EES04073	Sorghum	nucleus	59.87	61.44
GSMUA_Achr6P06710_001	Banana	nucleus	59.45	60.87
PGSC0003DMT400032842	Potato	mitochondrion	62.63	60.7
Zm00001d042437_P005	Maize	cytosol	60.3	60.17
Bra024254.1-P	Field mustard	mitochondrion	46.71	60.11
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	42.25	58.19
TraesCS3A01G414400.2	Wheat	cytosol	53.29	57.57
Zm00001d012101_P002	Maize	mitochondrion	59.66	55.31
Bra035112.1-P	Field mustard	plastid	45.22	52.99
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	60.72	52.87
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	60.93	52.56
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	59.02	51.77
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	58.81	51.39
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	39.07	50.83
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	57.96	48.84
HORVU3Hr1G092250.6	Barley	plastid	57.11	48.47
OQU79014	Sorghum	plastid	53.08	47.26
Bra012681.1-P	Field mustard	cytosol	9.77	41.07
Bra018339.1-P	Field mustard	cytosol	11.68	37.16
Bra021976.1-P	Field mustard	plastid	22.93	29.03
Bra014181.1-P	Field mustard	plastid	21.02	26.05
Bra007134.1-P	Field mustard	mitochondrion	16.14	20.94
Bra010041.1-P	Field mustard	cytosol	20.17	16.38
Bra009273.1-P	Field mustard	cytosol	20.38	16.3
Bra005931.1-P	Field mustard	cytosol	20.17	16.18
Bra029301.1-P	Field mustard	cytosol, plastid	19.96	16.18
Bra031645.1-P	Field mustard	cytosol	19.11	15.44

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra006253	EnsemblPlants:Bra006253.1	EnsemblPlants:Bra006253.1-P
ncoils:Coil	InterPro:Copine	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465
UniProt:M4CPW4	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28
SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000253FB4C	InterPro:VWF_A	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

AT5G14420 (E=1e-191) RGLG2 | RGLG2 (RING domain Ligase2); ubiquitin-protein ligase

Coordinates

chrA03:-:2703870..2705841

Molecular Weight (calculated)

51819.5 Da

IEP (calculated)

5.313

GRAVY (calculated)

-0.561

Length

471 amino acids

Sequence
(BLAST)

001: MGTGNSKESW RQESSSSSFR SASASSASPS SSSWASHQSY PQYGPESYNY PPTPSYAPHP PPEYAQPPPA PSYSTQPYSQ PPSYSHGNDK KRLERKFSKI
101: SDEYSSLEQV TEALARAGLE SSNLIVGIDF TKSNEWTGAR SFNRKSLHYI GNNPNPYEQA ITIIGRTLAA FDEDNLIPCY GFGDASTHDQ DVFSFNPEDR
201: FCNGFEEVLG RYKEIVPQLK LAGPTSFAPI IDMAMTIVEQ SGGQYHVLVI IADGQVTRSV DTENGQLSPQ EQKTVEAIVQ ASKVPLSIVL VGVGDGPWDM
301: MREFDDNIPS RAFDNFQFVN FTEIMSKNKA QSLKETEFAL SALMEIPQQY KATLELSLLG RRNGNIQERF PLPPPMHGGG SSFNNKPKTN RVPSFKPSVP
401: PYPSESYPVR SSPAPPPATT SASDNQLCPI CLSSPKDMAF GCGHQTCCEC GPDLEMCPIC RAPIQTRIKL Y

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.