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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • nucleus 3
  • plastid 2
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX70564 Canola cytosol, plastid 90.17 89.6
CDX91062 Canola cytosol, plastid 86.11 89.16
CDX85597 Canola cytosol, plastid 85.47 88.69
Bra023465.1-P Field mustard cytosol, plastid 85.47 88.69
CDY09854 Canola nucleus, plastid 88.03 88.41
CDX78576 Canola cytosol, plastid 88.89 88.32
Bra006253.1-P Field mustard nucleus, plastid 88.89 88.32
Bra008758.1-P Field mustard nucleus 87.82 88.2
CDX69581 Canola nucleus, plastid 87.82 88.2
AT3G01650.2 Thale cress cytosol 76.92 73.62
VIT_14s0066g00290.t01 Wine grape mitochondrion 68.59 69.63
TraesCS5B01G111900.1 Wheat cytosol 33.55 65.15
Solyc02g093520.2.1 Tomato nucleus 67.95 64.63
Zm00001d048784_P001 Maize cytosol 42.09 63.96
AT1G67800.2 Thale cress plasma membrane 61.54 63.58
Os01t0908700-01 Rice plasma membrane, plastid 60.26 63.23
GSMUA_Achr9P29460_001 Banana nucleus 62.61 62.61
EES04073 Sorghum nucleus 61.32 62.53
GSMUA_Achr8P01300_001 Banana nucleus 57.91 62.44
GSMUA_Achr6P06710_001 Banana nucleus 61.11 62.17
PGSC0003DMT400032842 Potato mitochondrion 64.53 62.14
TraesCS3B01G449200.1 Wheat cytosol 61.54 61.67
TraesCS3D01G408900.1 Wheat cytosol 61.32 61.59
Zm00001d042437_P005 Maize cytosol 60.9 60.38
AT5G63970.1 Thale cress cytosol 46.37 59.13
TraesCS3A01G414400.2 Wheat cytosol 53.63 57.57
Zm00001d012101_P002 Maize mitochondrion 60.47 55.71
AT1G79380.1 Thale cress mitochondrion 47.01 54.86
Zm00001d041073_P001 Maize endoplasmic reticulum, golgi, vacuole 62.18 53.79
Os12t0288400-01 Rice endoplasmic reticulum, extracellular, vacuole 62.61 53.66
TraesCS5D01G122000.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 59.62 51.96
HORVU5Hr1G039100.3 Barley endoplasmic reticulum, extracellular, golgi 59.4 51.58
TraesCS5A01G103800.2 Wheat endoplasmic reticulum, extracellular, golgi 58.97 49.37
HORVU3Hr1G092250.6 Barley plastid 58.12 49.01
OQU79014 Sorghum plastid 54.49 48.2
AT1G24545.1 Thale cress cytosol 18.59 47.8
AT5G61900.3 Thale cress cytosol 21.58 17.47
AT5G07300.1 Thale cress cytosol 20.94 16.72
AT1G08860.1 Thale cress cytosol 20.51 16.44
AT5G61910.4 Thale cress cytosol 21.58 7.5
Protein Annotations
MapMan:19.2.2.1.5.3.2MapMan:19.2.2.1.6.2Gene3D:3.30.40.10EntrezGene:831293ProteinID:AED92028.1ProteinID:AED92029.1
ProteinID:AED92030.1ProteinID:AED92031.1ArrayExpress:AT5G14420EnsemblPlantsGene:AT5G14420RefSeq:AT5G14420TAIR:AT5G14420
RefSeq:AT5G14420-TAIR-GEnsemblPlants:AT5G14420.2TAIR:AT5G14420.2EMBL:AY099597Unigene:At.5177EMBL:BT000249
ProteinID:CAB87781.1ncoils:CoilInterPro:CopineEMBL:DQ086862GO:GO:0003674GO:GO:0003824
GO:GO:0004842GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005886GO:GO:0006464GO:GO:0006950GO:GO:0007154GO:GO:0007165
GO:GO:0008150GO:GO:0008152GO:GO:0009628GO:GO:0009690GO:GO:0009719GO:GO:0009738
GO:GO:0009850GO:GO:0009987GO:GO:0016020GO:GO:0016567GO:GO:0016740GO:GO:0019538
GO:GO:0046872GO:GO:0080148InterPro:IPR001841InterPro:IPR002035InterPro:IPR013083InterPro:IPR036465
RefSeq:NP_196946.1RefSeq:NP_850818.1RefSeq:NP_974779.1RefSeq:NP_974780.1PFAM:PF07002PFAM:PF13920
PO:PO:0000013PO:PO:0000036PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293
PO:PO:0000332PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0003011
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PFscan:PS50089PANTHER:PTHR10857
PANTHER:PTHR10857:SF28UniProt:Q9LY87Symbol:RGLG2SMART:SM00327SUPFAM:SSF53300SUPFAM:SSF57850
UniParc:UPI00000AC03DInterPro:VWF_AInterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDSEG:segInterPro:vWFA_dom_sf
Description
RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
Coordinates
chr5:-:4648111..4651442
Molecular Weight (calculated)
51580.3 Da
IEP (calculated)
5.307
GRAVY (calculated)
-0.528
Length
468 amino acids
Sequence
(BLAST)
001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.