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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT5G61900.3 Thale cress cytosol 42.94 100.0
CDY00235 Canola cytosol 38.78 90.0
Bra010041.1-P Field mustard cytosol 38.78 90.0
CDX86951 Canola cytosol 38.56 89.48
Bra029301.1-P Field mustard cytosol, plastid 38.56 89.33
AT5G07300.1 Thale cress cytosol 34.7 79.69
VIT_17s0000g00210.t01 Wine grape cytosol 31.57 73.78
KRH41052 Soybean endoplasmic reticulum 31.13 72.24
Solyc03g118200.2.1 Tomato cytosol 30.76 71.38
KRH54085 Soybean cytosol 29.64 69.03
KRH20017 Soybean cytosol 13.82 68.13
Solyc06g068840.2.1 Tomato cytosol 29.2 68.11
GSMUA_AchrUn_... Banana cytosol, golgi, plastid 21.4 65.75
KRH63871 Soybean cytosol 29.35 63.5
AT1G08860.1 Thale cress cytosol 25.63 59.08
Os02t0521300-01 Rice plasma membrane 25.56 58.9
Zm00001d016615_P002 Maize plasma membrane 23.55 58.27
KXG30293 Sorghum cytosol 24.96 58.13
TraesCS6B01G235200.1 Wheat plastid 24.74 57.71
TraesCS6D01G176800.1 Wheat cytosol, nucleus, plastid 24.59 57.67
TraesCS6A01G189800.1 Wheat cytosol 24.44 57.32
HORVU6Hr1G041140.14 Barley mitochondrion 26.23 54.81
AT1G24545.1 Thale cress cytosol 3.42 25.27
AT5G63970.1 Thale cress cytosol 6.02 22.07
AT5G14420.2 Thale cress nucleus, plastid 7.5 21.58
AT1G67800.2 Thale cress plasma membrane 6.98 20.75
AT1G79380.1 Thale cress mitochondrion 6.02 20.2
AT3G01650.2 Thale cress cytosol 7.21 19.84
Protein Annotations
Gene3D:2.60.40.150MapMan:27.2.7EntrezGene:836311EntrezGene:836312ProteinID:AED97533.1ProteinID:AED97534.1
ProteinID:AED97535.1ArrayExpress:AT5G61910EnsemblPlantsGene:AT5G61910RefSeq:AT5G61910TAIR:AT5G61910RefSeq:AT5G61910-TAIR-G
EnsemblPlants:AT5G61910.4TAIR:AT5G61910.4EMBL:AY045764EMBL:AY062824EMBL:AY085339Unigene:At.20314
ProteinID:BAB08876.1InterPro:BONZAIEMBL:BT010555InterPro:C2B_CopineInterPro:C2_domInterPro:C2_domain_sf
InterPro:CopineInterPro:Dev_and_cell_death_domainUniProt:F4K518GO:GO:0003674GO:GO:0005488GO:GO:0005544
GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0006950GO:GO:0006952GO:GO:0008150
GO:GO:0008219GO:GO:0008289GO:GO:0009266GO:GO:0009270GO:GO:0009506GO:GO:0009628
GO:GO:0009987GO:GO:0016020GO:GO:0016043GO:GO:0045793GO:GO:0060548InterPro:IPR000008
InterPro:IPR002035InterPro:IPR013989InterPro:IPR035892InterPro:IPR036465RefSeq:NP_001190590.1RefSeq:NP_568944.1
RefSeq:NP_974977.1PFAM:PF00168PFAM:PF07002PFAM:PF10539PO:PO:0000013PO:PO:0000037
PO:PO:0000230PO:PO:0000293PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025195PO:PO:0025281PFscan:PS50004PFscan:PS50234
PFscan:PS51222PANTHER:PTHR10857PANTHER:PTHR10857:SF108SMART:SM00239SMART:SM00327SMART:SM00767
SUPFAM:SSF49562SUPFAM:SSF53300UniParc:UPI0001E9308AInterPro:VWF_ASEG:segInterPro:vWFA_dom_sf
Description
DCD (Development and Cell Death) domain protein [Source:UniProtKB/TrEMBL;Acc:F4K518]
Coordinates
chr5:-:24855621..24864172
Molecular Weight (calculated)
147178.0 Da
IEP (calculated)
6.850
GRAVY (calculated)
-0.392
Length
1346 amino acids
Sequence
(BLAST)
0001: METEMDFSDG EQTNGNSHVT ASQYFAPPGY NRSLVAAYGN GNTTIGLEKG IERRLDHHEQ LPGYIFMCNG RTKTDCYRYR VFGIPRGGKD VVESIKPGMK
0101: LFLYDFEKRL LYGVYEATVG GRLDIEPEAF EGKYPAQVGF RIVMNCLPLT ENTFKSAIYE NYKGSKFKQE LSPHQVMSLL SLFRSFTSPE LDLLPHRLAS
0201: RASAPRTLSF EERFIAATHL RNASSVLDPL SARHVEPRLG SVMAHQPVPR TSLLQHSYFR QDDYTTPPRE SLSNLNQPYY PTEARQLRLL GDPSRSDSPR
0301: SEPPRSSIQD PQLKYLTILS NIRRYGSASD RLASENEYHP ATPSEKDQFA VPYSDNKNYP STLSGSEHPS ASAANGSVYR SEFYNSASQK EGEASQQHEI
0401: PAGTYHHPEA STVSNTTKSM QPDMQAVSVA QSHTETAGYP TPAHGEASQP PAGAIGYTHQ PQSVAGNYST HSQPGNVEES TQSYAGTDSY SQQQYYAAMG
0501: PTTQLHAGGY IQKPHEIGYS QQPHDAATGY SQQPHDAATG YSQQPHDAAT GYSQQPHAAS TGYSQQTYAA ATGYTQQPHA AAAGYTQQPH AAATGYSQQP
0601: HAAATAHAQQ PYAAATAHAQ QLHAVATGYA LQLHAAATGY AQQPHAAATG YALQPHAQAV EYTMQPHAQA VGYMPQYHAH AVEIGMQCIS LITLRQQMQP
0701: QRIIKHLKTL KQSVATLDLR NLCVMGAEAW TRTGALSGKE GQGHKTRVSS SVYCTFESAV FFVGKSKIMG NCCSDVASGA GATAGVGGSG SSAALGATND
0801: ALDYYLKSKG FNGLFSQIEL SFSASNLRDR DVLSKSDPMV VVYQKEKDAT LSEVFRSEVV LNSLAPKWIK KFIVAYHFET VQTLVFRVYD VDTKFQNSRE
0901: EMLKLDEQQF LGEATCALSE IITKSTRTST LELKRKDGFA PQAQPHHGKL IIHAEESLAS KISTEIVFRC SNLESKDLFS KSDPFLVVSK IVEHGTPIPV
1001: SKTEVRKNDL NPIWKPVFLS VQQVGSKDSP VIIECSDFNS NGKHSLIGKV QKSLSDLEKL HLAGQGINFS LPTGAGQNKV LKSQLFVDKF TETVHHTFLE
1101: YLASGFELNF MVAIDFTASN GNPRLPDSLH YIDPSGRLNA YQRAIMDVGE VLQFYDSDKR FPAWGFGARP IDAPVSHCFN LNGSSSYSEV DGIQGIMTSY
1201: TSALFNVSLA GPTLFGPVIN AAAMIASASL AQGSRKYYVL LIITDGVITD LQETKDALVS ASDLPLSILI VGVGGADFKE MEILDADKGE RLESSSGRLA
1301: SRDIVQFVAL RDVQYGEISV VQALLAELPS QFLTYMRIRN MKPIPP
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.