Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000997.1-P | Field mustard | nucleus | 79.75 | 85.15 |
| CDX74310 | Canola | cytosol | 79.35 | 84.72 |
| CDX91935 | Canola | cytosol | 79.14 | 84.68 |
| CDY49066 | Canola | cytosol | 79.35 | 84.35 |
| Bra039105.1-P | Field mustard | nucleus | 78.32 | 83.99 |
| CDY37509 | Canola | cytosol | 78.94 | 83.91 |
| AT5G14420.2 | Thale cress | nucleus, plastid | 73.62 | 76.92 |
| VIT_14s0066g00290.t01 | Wine grape | mitochondrion | 62.78 | 66.59 |
| Zm00001d048784_P001 | Maize | cytosol | 39.88 | 63.31 |
| GSMUA_Achr8P01300_001 | Banana | nucleus | 55.83 | 62.9 |
| EES04073 | Sorghum | nucleus | 58.08 | 61.87 |
| TraesCS5B01G111900.1 | Wheat | cytosol | 30.47 | 61.83 |
| GSMUA_Achr9P29460_001 | Banana | nucleus | 59.1 | 61.75 |
| Solyc02g093520.2.1 | Tomato | nucleus | 61.76 | 61.38 |
| GSMUA_Achr6P06710_001 | Banana | nucleus | 57.46 | 61.09 |
| TraesCS3B01G449200.1 | Wheat | cytosol | 58.08 | 60.81 |
| Os01t0908700-01 | Rice | plasma membrane, plastid | 55.42 | 60.76 |
| TraesCS3D01G408900.1 | Wheat | cytosol | 57.87 | 60.73 |
| AT1G67800.2 | Thale cress | plasma membrane | 55.83 | 60.26 |
| Zm00001d042437_P005 | Maize | cytosol | 57.67 | 59.75 |
| PGSC0003DMT400032842 | Potato | mitochondrion | 58.69 | 59.05 |
| AT5G63970.1 | Thale cress | cytosol | 43.97 | 58.58 |
| TraesCS3A01G414400.2 | Wheat | cytosol | 50.92 | 57.11 |
| Zm00001d012101_P002 | Maize | mitochondrion | 58.28 | 56.1 |
| AT1G79380.1 | Thale cress | mitochondrion | 43.35 | 52.87 |
| TraesCS5D01G122000.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 56.44 | 51.4 |
| Os12t0288400-01 | Rice | endoplasmic reticulum, extracellular, vacuole | 57.26 | 51.28 |
| HORVU5Hr1G039100.3 | Barley | endoplasmic reticulum, extracellular, golgi | 56.03 | 50.83 |
| Zm00001d041073_P001 | Maize | endoplasmic reticulum, golgi, vacuole | 56.03 | 50.65 |
| TraesCS5A01G103800.2 | Wheat | endoplasmic reticulum, extracellular, golgi | 56.03 | 49.02 |
| HORVU3Hr1G092250.6 | Barley | plastid | 54.4 | 47.93 |
| OQU79014 | Sorghum | plastid | 49.49 | 45.75 |
| AT1G24545.1 | Thale cress | cytosol | 16.97 | 45.6 |
| AT5G61900.3 | Thale cress | cytosol | 19.84 | 16.78 |
| AT5G07300.1 | Thale cress | cytosol | 19.63 | 16.38 |
| AT1G08860.1 | Thale cress | cytosol | 19.43 | 16.27 |
| AT5G61910.4 | Thale cress | cytosol | 19.84 | 7.21 |
Protein Annotations
| MapMan:19.2.2.1.5.3.2 | MapMan:19.2.2.1.6.2 | Gene3D:3.30.40.10 | EntrezGene:819911 | UniProt:A0A178VGS3 | ProteinID:AAF01562.1 |
| ProteinID:AEE73699.1 | ProteinID:ANM63886.1 | ArrayExpress:AT3G01650 | EnsemblPlantsGene:AT3G01650 | RefSeq:AT3G01650 | TAIR:AT3G01650 |
| RefSeq:AT3G01650-TAIR-G | EnsemblPlants:AT3G01650.2 | EMBL:BX824117 | InterPro:Copine | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005886 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009738 | GO:GO:0009789 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | GO:GO:0070534 |
| GO:GO:0080148 | InterPro:IPR001841 | InterPro:IPR002035 | InterPro:IPR013083 | InterPro:IPR036465 | RefSeq:NP_001325948.1 |
| RefSeq:NP_186814.1 | ProteinID:OAP04102.1 | PFAM:PF07002 | PFAM:PF13920 | PFscan:PS50089 | PANTHER:PTHR10857 |
| PANTHER:PTHR10857:SF28 | UniProt:Q9SS90 | Symbol:RGLG1 | SMART:SM00327 | SUPFAM:SSF53300 | SUPFAM:SSF57850 |
| UniParc:UPI00000A4509 | InterPro:VWF_A | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | InterPro:vWFA_dom_sf |
Description
RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
Coordinates
chr3:+:241758..245271
Molecular Weight (calculated)
53314.2 Da
IEP (calculated)
5.032
GRAVY (calculated)
-0.495
Length
489 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.