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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid

Predictor Summary:
  • nucleus 4
  • mitochondrion 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane, plastid
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3D01G408900.1 Wheat cytosol 88.79 84.98
TraesCS3B01G449200.1 Wheat cytosol 88.79 84.8
EES04073 Sorghum nucleus 85.87 83.44
TraesCS3A01G414400.2 Wheat cytosol 79.82 81.65
Zm00001d042437_P005 Maize cytosol 85.87 81.14
Zm00001d012101_P002 Maize mitochondrion 86.55 75.98
GSMUA_Achr8P01300_001 Banana nucleus 68.61 70.51
Zm00001d048784_P001 Maize cytosol 48.65 70.45
GSMUA_Achr9P29460_001 Banana nucleus 73.09 69.66
HORVU3Hr1G092250.6 Barley plastid 83.18 66.85
KRH54288 Soybean cytosol, mitochondrion, nucleus, plastid 63.23 65.89
VIT_01s0137g00460.t01 Wine grape nucleus 65.25 65.84
KRH63659 Soybean cytosol, mitochondrion, nucleus, plastid 63.0 65.81
CDX84957 Canola cytosol 56.73 65.71
Bra032793.1-P Field mustard nucleus 56.28 65.71
VIT_17s0000g09640.t01 Wine grape cytosol, mitochondrion, nucleus, plastid 63.68 65.59
CDY27584 Canola cytosol 34.08 65.52
KRG94356 Soybean nucleus 62.11 64.72
Solyc03g111870.2.1 Tomato nucleus 62.11 63.39
Os08t0494300-01 Rice plasma membrane 55.61 62.63
KRH43098 Soybean endoplasmic reticulum, golgi 63.9 61.96
CDX91062 Canola cytosol, plastid 62.78 61.95
KRH59243 Soybean endoplasmic reticulum, golgi 63.68 61.74
Bra023465.1-P Field mustard cytosol, plastid 62.33 61.64
CDX85597 Canola cytosol, plastid 62.33 61.64
VIT_14s0066g00290.t01 Wine grape mitochondrion 63.45 61.39
Bra039105.1-P Field mustard nucleus 62.33 60.96
CDY49066 Canola cytosol 62.78 60.87
CDY01855 Canola cytosol, plastid 60.09 60.77
CDY37509 Canola cytosol 62.56 60.65
KRG97516 Soybean golgi, plasma membrane 62.11 60.35
Bra004260.1-P Field mustard plastid 59.64 60.32
CDX69581 Canola nucleus, plastid 63.0 60.3
Bra008758.1-P Field mustard nucleus 63.0 60.3
AT5G14420.2 Thale cress nucleus, plastid 63.23 60.26
Solyc02g093520.2.1 Tomato nucleus 66.37 60.16
CDY56212 Canola plastid 59.42 60.09
CDY09854 Canola nucleus, plastid 62.78 60.09
Bra000997.1-P Field mustard nucleus 61.66 60.04
CDX74310 Canola cytosol 61.66 60.04
CDX91935 Canola cytosol 61.44 59.96
CDX70564 Canola cytosol, plastid 62.78 59.45
KRH58251 Soybean nucleus 65.25 59.27
CDX78576 Canola cytosol, plastid 62.56 59.24
Bra006253.1-P Field mustard nucleus, plastid 62.11 58.81
KRH31355 Soybean golgi, plasma membrane 60.99 58.75
PGSC0003DMT400032842 Potato mitochondrion 63.9 58.64
KRG93947 Soybean nucleus 65.02 58.47
AT1G67800.2 Thale cress plasma membrane 58.97 58.06
Os06t0608800-02 Rice nucleus 57.62 57.49
Os08t0135400-01 Rice plasma membrane 51.12 56.86
Os01t0960500-01 Rice plasma membrane 48.43 55.81
AT3G01650.2 Thale cress cytosol 60.76 55.42
CDY27585 Canola cytosol 15.25 52.31
Os12t0288400-01 Rice endoplasmic reticulum, extracellular, vacuole 63.68 52.01
Os09t0565300-01 Rice cytosol 10.99 51.04
KRG95016 Soybean nucleus, peroxisome, plasma membrane 40.58 50.0
AT1G24545.1 Thale cress cytosol 18.16 44.51
PGSC0003DMT400039186 Potato cytosol 62.11 28.85
Os05t0373300-01 Rice plasma membrane 22.87 17.11
Os02t0521300-01 Rice plasma membrane 19.73 15.07
Os09t0565200-02 Rice extracellular 5.38 7.45
Os09t0565350-00 Rice cytosol 3.14 3.16
Protein Annotations
MapMan:19.2.2.1.5.3.2MapMan:19.2.2.1.6.2Gene3D:3.30.40.10ProteinID:BAD82322.1ProteinID:BAD82758.1ProteinID:BAF07060.1
ProteinID:BAS75813.1InterPro:CopineInterPro:IPR001841InterPro:IPR002035InterPro:IPR013083InterPro:IPR036465
EnsemblPlantsGene:Os01g0908700EnsemblPlants:Os01t0908700-01PFAM:PF07002PFAM:PF13920PFscan:PS50089PANTHER:PTHR10857
PANTHER:PTHR10857:SF28UniProt:Q5N6Z8SMART:SM00327SUPFAM:SSF53300SUPFAM:SSF57850UniParc:UPI000049EA02
InterPro:VWF_AInterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDSEG:segInterPro:vWFA_dom_sf:
Description
RING finger proteinSimilar to Hnrpa2b1-prov protein. (Os01t0908700-01)
Coordinates
chr1:-:39565772..39569993
Molecular Weight (calculated)
48079.1 Da
IEP (calculated)
6.314
GRAVY (calculated)
-0.428
Length
446 amino acids
Sequence
(BLAST)
001: MGGGQSRSPR DGSGHGRYGH SPSFQQQWGG GGGGGGGGGG GYPYGQDAHG GGYYGAPARA GGASKPRLDR RYSRIADDYH SVDQVTDALA QAGLESSNLI
101: VGIDFTKSNE WLGKFSFHGR SLHHISNAPN PYEQAISIIG QTLSKFDEDN LIPCFGFGDA TTHDQDVFCF YPDLRPCNGF SEALSRYREL VPHLRLAGPT
201: SFAPIIEMAM TIVEQSGGQY HVLLIIADGQ VTRSVDTASG QLSSQEQKTV DAIVRASELP LSIVLVGVGD GPWDMMKEFD DNIPSRAFDN FQFVNFSEIM
301: NKNMPQSRKE AAFALSALME IPQQYKATVE LGILGRRSFK SPERVPLPPP GGSHDAYSYG SKSFSKPSTY PQSSTSSSSY PHYETAQSSS PAVPSSTYDN
401: QVCPICLVNP KDMAFGCGHQ TCCDCGQSLE SCPICRSPIS TRIKLY
Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)
001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY
Arabidopsis Description
RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.