CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	95.08	94.86
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	76.81	75.75
Solyc03g111870.2.1	Tomato	nucleus	72.6	70.94
KRH07106	Soybean	cytosol, plastid	45.9	67.35
KRG94356	Soybean	nucleus	65.57	65.42
KRH43098	Soybean	endoplasmic reticulum, golgi	70.02	65.0
KRH43661	Soybean	cytosol	50.82	64.58
KRH59243	Soybean	endoplasmic reticulum, golgi	69.32	64.35
TraesCS5B01G111900.1	Wheat	cytosol	35.83	63.49
Zm00001d048784_P001	Maize	cytosol	45.67	63.31
KRG97516	Soybean	golgi, plasma membrane	67.92	63.18
Os01t0908700-01	Rice	plasma membrane, plastid	65.81	63.0
EES04073	Sorghum	nucleus	67.68	62.96
GSMUA_Achr9P29460_001	Banana	nucleus	68.38	62.39
KRH31355	Soybean	golgi, plasma membrane	67.21	61.99
TraesCS3B01G449200.1	Wheat	cytosol	66.98	61.24
TraesCS3D01G408900.1	Wheat	cytosol	66.74	61.16
GSMUA_Achr8P01300_001	Banana	nucleus	61.83	60.83
Zm00001d042437_P005	Maize	cytosol	66.74	60.38
GSMUA_Achr6P06710_001	Banana	nucleus	64.87	60.22
KRH58251	Soybean	nucleus	69.09	60.08
KRH07102	Soybean	cytosol	19.67	60.0
KRG93947	Soybean	nucleus	68.85	59.27
TraesCS3A01G414400.2	Wheat	cytosol	58.08	56.88
KRH59596	Soybean	nucleus	55.97	56.1
Zm00001d012101_P002	Maize	mitochondrion	66.74	56.1
KRH13149	Soybean	cytosol, plastid	53.63	54.92
KRH64018	Soybean	nucleus	55.27	54.63
KRH44829	Soybean	nucleus, plastid	54.1	54.35
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	63.23	49.91
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	42.15	49.72
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	62.53	49.72
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	63.23	49.45
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	62.3	49.35
HORVU3Hr1G092250.6	Barley	plastid	62.76	48.29
KRH40948	Soybean	nucleus	40.28	48.18
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	62.06	47.41
OQU79014	Sorghum	plastid	56.44	45.56
KRH53919	Soybean	nucleus	37.94	43.2
PGSC0003DMT400039186	Potato	cytosol	72.83	32.4
KRH20017	Soybean	cytosol	16.86	26.37
KRH68625	Soybean	cytosol	23.65	17.09
KRH68626	Soybean	cytosol	23.18	17.07
KRG96891	Soybean	cytosol	23.65	17.0
KRH54085	Soybean	cytosol	22.72	16.78
KRH41052	Soybean	endoplasmic reticulum	22.72	16.72
KRH63871	Soybean	cytosol	22.48	15.43
KRH13085	Soybean	extracellular, vacuole	16.86	13.79
KRH44837	Soybean	extracellular, golgi	16.63	13.76
KRH44834	Soybean	plasma membrane	13.82	12.04
KRH13151	Soybean	nucleus, vacuole	13.82	11.05

Protein Annotations

EntrezGene:100809850	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	EMBL:ACUP02002704	EMBL:BT097587
UniProt:C6TIU9	InterPro:Copine	EnsemblPlantsGene:GLYMA_04G189900	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	EnsemblPlants:KRH63659	ProteinID:KRH63659	ProteinID:KRH63659.1	ProteinID:KRH63660.1	PFAM:PF07002
PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF62	SMART:SM00327	SUPFAM:SSF53300
SUPFAM:SSF57850	UniParc:UPI0001B16D7F	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:vWFA_dom_sf

Description

hypothetical protein

Coordinates

chr4:+:46066608..46070919

Molecular Weight (calculated)

47458.8 Da

IEP (calculated)

6.138

GRAVY (calculated)

-0.511

Length

427 amino acids

Sequence
(BLAST)

001: MGGSISKRRR SKQHSSNFFP RYQQPHFPQS QDNGSVGHYG YSPQSYGGGR APEQGKSLDR KYSRIGDDYK SLDQVTDALA KAGLESSNLI VGIDFTKSNE
101: WTGGRSFQRR CLHHIGHEQN PYEQAISIIG KTLSSFDEDN LIPCFGFGDA STHDQEVFSF YPDERFCRGF EEVLERYREL VPQLKLAGPT SFAPVIEMAI
201: TIVEQSGGQY HVLVIIADGQ VTRSVDTEHG QLSAQEKKTV EAIVKASEYP LSIILVGVGD GPWDMMKQFD DNIPARAFDN FQFVNFTEIM SKNMDRSRKE
301: TEFALAALME IPSQYKATLE LNILGACRGK DIDRIPLPPP LYGAASFNSP KTSRQYSSRP SAPSSRHDVS TNPPATSASD NQVCPICLTD PKDMAFGCGH
401: QTCCDCGQDL ELCPICRSTI DTRIKLY

Best Arabidopsis Sequence Match ( AT3G01650.1 )
(BLAST)

001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY

Arabidopsis Description

RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.