Factsheet for Solyc03g111870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	70.94	72.6
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	71.85	72.52
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	70.94	72.43
Zm00001d048784_P001	Maize	cytosol	45.77	64.94
Os01t0908700-01	Rice	plasma membrane, plastid	63.39	62.11
EES04073	Sorghum	nucleus	64.76	61.66
GSMUA_Achr9P29460_001	Banana	nucleus	64.99	60.68
TraesCS3B01G449200.1	Wheat	cytosol	64.53	60.39
GSMUA_Achr8P01300_001	Banana	nucleus	59.95	60.37
TraesCS3D01G408900.1	Wheat	cytosol	64.3	60.3
Solyc02g093520.2.1	Tomato	nucleus	67.05	59.55
Zm00001d042437_P005	Maize	cytosol	63.84	59.11
TraesCS3A01G414400.2	Wheat	cytosol	58.35	58.49
GSMUA_Achr6P06710_001	Banana	nucleus	59.73	56.74
TraesCS5B01G111900.1	Wheat	cytosol	31.12	56.43
Zm00001d012101_P002	Maize	mitochondrion	64.3	55.31
Solyc09g065870.2.1	Tomato	nucleus	50.8	52.86
HORVU3Hr1G092250.6	Barley	plastid	62.47	49.19
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	60.87	49.17
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	61.33	49.08
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	59.73	48.6
Solyc05g053870.2.1	Tomato	plastid	50.11	48.56
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	59.04	47.87
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	59.27	46.33
OQU79014	Sorghum	plastid	55.61	45.94
PGSC0003DMT400039186	Potato	cytosol	95.42	43.44
Solyc10g045520.1.1	Tomato	cytosol	8.7	27.34
Solyc10g045500.1.1	Tomato	cytosol	7.09	24.22
Solyc06g068840.2.1	Tomato	cytosol	22.2	16.81
Solyc03g118200.2.1	Tomato	cytosol	22.2	16.72

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	ncoils:Coil	InterPro:Copine	InterPro:IPR001841
InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:K4BK48	PFAM:PF07002	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF62	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
EnsemblPlantsGene:Solyc03g111870.2	EnsemblPlants:Solyc03g111870.2.1	UniParc:UPI00027692E1	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

No Description!

Coordinates

chr3:-:62466029..62471892

Molecular Weight (calculated)

47806.0 Da

IEP (calculated)

6.184

GRAVY (calculated)

-0.439

Length

437 amino acids

Sequence
(BLAST)

001: MGGKSSKRST IGRYASYGSS SNSGYPGYAQ SPYTQPTYPP PPSYQTYGGP PPESRKRLER KFSKIDDDYN SLEQVTDALA RAGLESSNLI VGIDFTKSNE
101: WTGARSFHRK SLHHIGDGQN PYEQAISIIG RTLSKFDEDN LIPCYGFGDA STHDQEVFSF YPDEKFCNGF EEVLGRYREL VPQLRLAGPT SFAPVIEMAI
201: TIVEQSGGQY HVLLIIADGQ VTRSVDTVNG QLSPQEKRTV EAIVKASQYP LSIVLVGVGD GPWDMMREFD DNIPARAFDN FQFVNFTDIM AKNMALSRKE
301: AEFALSALME IPSQYKATLE LNILGARRGN EIDRIALHPP QYGAASFGTS KPSQNSSYRP SAPSSSGHNS AVGSGHNSAV GSSHPASSAD NQLCPICITN
401: PKDMAFGCGH QTCCECGQDL LLCPICRDSI QTRIKLY

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.