CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27585	Canola	cytosol	31.69	93.85
CDY27584	Canola	cytosol	55.58	92.24
CDY01855	Canola	cytosol, plastid	77.92	68.03
CDY56212	Canola	plastid	77.4	67.57
VIT_01s0137g00460.t01	Wine grape	nucleus	69.09	60.18
Zm00001d048784_P001	Maize	cytosol	48.05	60.06
CDX84471	Canola	cytosol, mitochondrion	55.06	58.4
KRH43098	Soybean	endoplasmic reticulum, golgi	69.61	58.26
GSMUA_Achr8P01300_001	Banana	nucleus	65.45	58.06
CDY43775	Canola	cytosol, mitochondrion	55.32	58.04
KRG97516	Soybean	golgi, plasma membrane	68.57	57.52
KRH59243	Soybean	endoplasmic reticulum, golgi	68.57	57.39
CDY31343	Canola	cytosol	54.55	57.22
KRH31355	Soybean	golgi, plasma membrane	68.31	56.8
CDX85597	Canola	cytosol, plastid	66.49	56.76
Os01t0908700-01	Rice	plasma membrane, plastid	65.71	56.73
CDX91062	Canola	cytosol, plastid	66.49	56.64
CDY39835	Canola	cytosol	53.51	56.13
CDX79314	Canola	cytosol, plastid	55.06	55.94
CDX67997	Canola	cytosol	54.81	55.82
CDX69581	Canola	nucleus, plastid	67.27	55.58
CDY09854	Canola	nucleus, plastid	67.01	55.36
EES04073	Sorghum	nucleus	65.45	54.9
GSMUA_Achr9P29460_001	Banana	nucleus	66.49	54.7
CDY49066	Canola	cytosol	65.19	54.57
CDX70564	Canola	cytosol, plastid	66.49	54.35
CDY37509	Canola	cytosol	64.94	54.35
TraesCS3B01G449200.1	Wheat	cytosol	65.71	54.18
TraesCS3D01G408900.1	Wheat	cytosol	65.45	54.08
CDY50776	Canola	cytosol	10.39	54.05
CDX91935	Canola	cytosol	64.16	54.05
CDX74310	Canola	cytosol	64.16	53.93
CDX78576	Canola	cytosol, plastid	65.71	53.72
CDX88533	Canola	plastid	55.84	53.35
TraesCS5B01G111900.1	Wheat	cytosol	33.25	53.11
GSMUA_Achr6P06710_001	Banana	nucleus	63.38	53.04
CDX87387	Canola	plastid	55.06	52.74
CDY49067	Canola	extracellular	20.52	52.67
Zm00001d042437_P005	Maize	cytosol	64.42	52.54
CDX99619	Canola	cytosol	9.09	51.47
TraesCS3A01G414400.2	Wheat	cytosol	57.66	50.92
Zm00001d012101_P002	Maize	mitochondrion	65.19	49.41
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	61.82	44.32
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	62.6	44.14
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	61.82	43.99
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	61.04	43.6
HORVU3Hr1G092250.6	Barley	plastid	62.08	43.06
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	61.56	42.4
OQU79014	Sorghum	plastid	55.32	40.26
CDX85680	Canola	mitochondrion, plastid	12.47	32.65
CDY52873	Canola	plastid	23.38	29.41
CDX72278	Canola	plastid	25.19	26.15
CDX98983	Canola	cytosol, plastid	16.36	25.71
CDY03984	Canola	cytosol	18.44	23.91
CDY00235	Canola	cytosol	22.08	14.66
CDX98984	Canola	cytosol	22.34	14.65
CDX70026	Canola	cytosol	22.34	14.6
CDX78287	Canola	cytosol	22.08	14.48
CDX81044	Canola	cytosol	22.08	14.48
CDX86951	Canola	cytosol	21.56	14.31
CDY25816	Canola	cytosol	1.82	14.29
CDY06335	Canola	cytosol	21.04	13.89
CDY22660	Canola	cytosol	20.78	13.77

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	GO:A0A078D6Z8	EnsemblPlants:CDX84957	ProteinID:CDX84957
ProteinID:CDX84957.1	InterPro:Copine	EnsemblPlantsGene:GSBRNA2T00142334001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004EDD200	InterPro:VWF_A
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

BnaC05g20980D

Coordinates

chrLK031839:-:675414..677665

Molecular Weight (calculated)

41637.9 Da

IEP (calculated)

6.100

GRAVY (calculated)

-0.299

Length

385 amino acids

Sequence
(BLAST)

001: MGSSSSKSRI NSTPQHPSTA SGLQQKNHDK KYSLIGDNYR STDEVTAALS QAGLESSNLI VGIDVTKSNE WTGERSFDGK SLHHIGPAPN PYEQAISIIG
101: KTLSSFDEDN LIPCYGFGDA TTHDQDVFSF FPDDAFCNGF EQVLSRYREI VPQLSLAGPT SFAPIIERAM TIVEESGGQY HVLLIIADGQ VTTQHGGLSS
201: QERKTIDAIV RASRYPLSIV LVGVGDGPWD TMRQFDDNIP ARAFDNFQFV NFTEIMGKNI DAGRKEAEFA VSALMEIPSQ YKATLALGLL GRRTGNCPNK
301: IARQPPTSGY NRAVSNSSKS SVSSSVASAP PTSSGSNESQ VCPICLVKTK NMAFNCGHQT CDECGEAIQT CPICRVSIAV RIKLY

Best Arabidopsis Sequence Match ( AT1G67800.2 )
(BLAST)

001: MLEVLQAIVL FILFWVWLSW MGGSSSKESP RGGGSGRRYE RSVSGSSSYS SAWDQSSYYQ TPNHPSASPV SSYNSGRQTP KNLERKYSRI ADNYRSIDEV
101: TAALSHAGLE SSNLIVGIDV TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM
201: CYREIVPQLR LSGPTSFAPI IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA
301: RAFDNFQFVN FTDIMSKNID PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST
401: THNESQQQFC PVCLVSAKNM AFNCGHQTCA GCGEDLHVCP ICRSSISVRI KLY

Arabidopsis Description

Copine (Calcium-dependent phospholipid-binding protein) family [Source:UniProtKB/TrEMBL;Acc:F4HTR6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.