CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79314	Canola	cytosol, plastid	96.83	96.57
CDX88533	Canola	plastid	88.62	83.13
CDX87387	Canola	plastid	88.36	83.08
CDX99619	Canola	cytosol	12.96	72.06
CDY50776	Canola	cytosol	14.02	71.62
KRH43661	Soybean	cytosol	62.17	69.94
KRH13149	Soybean	cytosol, plastid	69.31	62.83
VIT_19s0085g01000.t01	Wine grape	extracellular	62.96	61.82
KRH44829	Soybean	nucleus, plastid	69.05	61.41
TraesCS7A01G308900.1	Wheat	mitochondrion	64.02	60.35
TraesCS7D01G305600.1	Wheat	mitochondrion	63.49	59.11
GSMUA_Achr7P03440_001	Banana	cytosol	48.94	59.11
Os08t0135400-01	Rice	plasma membrane	62.7	59.1
CDX84471	Canola	cytosol, mitochondrion	55.29	57.58
CDY31343	Canola	cytosol	55.56	57.22
GSMUA_AchrUn_...	Banana	mitochondrion	62.96	57.21
Zm00001d035211_P001	Maize	mitochondrion	61.11	57.18
EES13310	Sorghum	mitochondrion	61.64	57.11
Solyc05g053870.2.1	Tomato	plastid	67.99	56.98
CDY43775	Canola	cytosol, mitochondrion	55.03	56.68
CDY39835	Canola	cytosol	54.76	56.4
CDY27584	Canola	cytosol	33.86	55.17
CDX84957	Canola	cytosol	55.82	54.81
TraesCS7B01G208900.1	Wheat	mitochondrion	60.58	54.52
PGSC0003DMT400040712	Potato	nucleus, plastid	68.52	53.51
CDX85597	Canola	cytosol, plastid	57.41	48.12
CDX91062	Canola	cytosol, plastid	56.88	47.57
CDY01855	Canola	cytosol, plastid	55.03	47.17
CDY56212	Canola	plastid	54.76	46.94
CDX69581	Canola	nucleus, plastid	57.41	46.57
CDY09854	Canola	nucleus, plastid	56.61	45.92
CDX74310	Canola	cytosol	55.03	45.41
CDX78576	Canola	cytosol, plastid	56.35	45.22
CDX70564	Canola	cytosol, plastid	56.35	45.22
CDX91935	Canola	cytosol	54.5	45.08
CDY37509	Canola	cytosol	54.5	44.78
CDY49066	Canola	cytosol	54.5	44.78
CDY27585	Canola	cytosol	14.55	42.31
CDX85680	Canola	mitochondrion, plastid	16.14	41.5
CDY49067	Canola	extracellular	16.4	41.33
CDY52873	Canola	plastid	30.16	37.25
CDX72278	Canola	plastid	32.54	33.15
CDY03984	Canola	cytosol	24.87	31.65
CDX98983	Canola	cytosol, plastid	15.08	23.27
CDY25816	Canola	cytosol	2.12	16.33
CDX98984	Canola	cytosol	20.63	13.29
CDX70026	Canola	cytosol	20.63	13.24
CDX81044	Canola	cytosol	20.11	12.95
CDX78287	Canola	cytosol	20.11	12.95
CDY00235	Canola	cytosol	19.84	12.93
CDX86951	Canola	cytosol	19.31	12.59
CDY06335	Canola	cytosol	19.31	12.52
CDY22660	Canola	cytosol	19.05	12.39

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	GO:A0A078BUV6	EnsemblPlants:CDX67997	ProteinID:CDX67997
ProteinID:CDX67997.1	InterPro:Copine	EnsemblPlantsGene:GSBRNA2T00099214001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF47
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004EED653	InterPro:VWF_A
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

BnaA07g20370D

Coordinates

chrLK031787:-:3263288..3265584

Molecular Weight (calculated)

41347.1 Da

IEP (calculated)

5.695

GRAVY (calculated)

-0.258

Length

378 amino acids

Sequence
(BLAST)

001: MSTGMGSGKG KSRPSPSDPS ILVSDKINAR EKYALIPDRF TSLDQVSKAL REAGLESSNL ILGIDFTKSN EWSGKTSFNG KSLHALGRIQ NPYEKAIFVI
101: GQTLAPFDED NLIPCFGFGD STTHDEEVFS FHSDNSPCHG FEEVLACYKR ITPNLILSGP TSYGPLIDAA VDIVEKNNGQ FHVLVIVADG QVTRGFDKAE
201: GELSQQERAT IDAIVNASSY ALSIVLIGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MKRDSSESAK EAAFALAALM EIPFQYQAAT ELGLLGKTTG
301: LAKKINPRPP PTPYTPTIRT ELASPASEEH TQSCPICLTS RKDVAFGCGH MTCRDCGSRI ANCPICRVVI TSRLRLYT

Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)

001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T

Arabidopsis Description

RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.