CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52873	Canola	plastid	78.71	95.42
Bra021976.1-P	Field mustard	plastid	83.56	83.33
CDX85680	Canola	mitochondrion, plastid	31.27	78.91
CDY50776	Canola	cytosol	7.28	36.49
CDX79314	Canola	cytosol, plastid	33.69	32.98
CDX67997	Canola	cytosol	33.15	32.54
CDX99619	Canola	cytosol	5.93	32.35
CDX87387	Canola	plastid	33.42	30.85
CDX88533	Canola	plastid	33.42	30.77
CDY27584	Canola	cytosol	18.87	30.17
CDY39835	Canola	cytosol	26.95	27.25
CDX84471	Canola	cytosol, mitochondrion	26.42	27.0
CDY31343	Canola	cytosol	26.68	26.98
CDY43775	Canola	cytosol, mitochondrion	26.42	26.7
CDX84957	Canola	cytosol	26.15	25.19
CDX91062	Canola	cytosol, plastid	29.11	23.89
CDX85597	Canola	cytosol, plastid	28.84	23.73
CDY37509	Canola	cytosol	28.57	23.04
CDY49066	Canola	cytosol	28.57	23.04
CDX69581	Canola	nucleus, plastid	28.84	22.96
CDX70564	Canola	cytosol, plastid	29.11	22.93
CDY01855	Canola	cytosol, plastid	27.22	22.9
CDX91935	Canola	cytosol	28.03	22.76
CDY09854	Canola	nucleus, plastid	28.57	22.75
CDX78576	Canola	cytosol, plastid	28.84	22.72
CDX74310	Canola	cytosol	28.03	22.71
CDY56212	Canola	plastid	26.95	22.68
CDX98983	Canola	cytosol, plastid	11.32	17.14
CDY03984	Canola	cytosol	11.59	14.48
CDY49067	Canola	extracellular	5.66	14.0
GSMUA_AchrUn_...	Banana	cytosol	6.2	12.37
CDX98984	Canola	cytosol	17.25	10.9
CDX70026	Canola	cytosol	16.98	10.7
CDX78287	Canola	cytosol	16.17	10.22
CDX81044	Canola	cytosol	16.17	10.22
CDY00235	Canola	cytosol	15.9	10.17
CDY06335	Canola	cytosol	15.63	9.95
CDX86951	Canola	cytosol	15.36	9.83
CDY22660	Canola	cytosol	15.36	9.81
OQU79015	Sorghum	mitochondrion	2.16	9.64
CDY27585	Canola	cytosol	2.96	8.46
CDY25816	Canola	cytosol	1.08	8.16

Protein Annotations

EnsemblPlants:CDX72278	EnsemblPlantsGene:GSBRNA2T00099750001	InterPro:Copine	PANTHER:PTHR10857	PANTHER:PTHR10857:SF47	PFAM:PF07002
ProteinID:CDX72278	ProteinID:CDX72278.1	SEG:seg	UniParc:UPI0004EF04C6	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2

Description

BnaC07g43000D

Coordinates

chrLK031796:+:399485..401638

Molecular Weight (calculated)

41037.6 Da

IEP (calculated)

4.629

GRAVY (calculated)

0.008

Length

371 amino acids

Sequence
(BLAST)

001: MVSTLSKSLS LTYSDACISQ SALATDSAAA TLTLSLRLRR CFSDYSAVCI LLCPRLQISS CSSLSYATSD LFPFSTTRFR WLLYSRIYHL HGVLATSHRL
101: GIVIDTDLGK LRSALREIVN PYENAIFVIG KTLAPSDEDN FISCFGFVDS TTHGEEVFSL HSDNSPSHGF EDVLPCYRGF TPNFPLSGPI SYELLIDAAV
201: DIVEQSNRQF HVLVIGADGH VKGNSDNKRK QLFLNVSVGD GPWADMRKMG NLIPKRVDLS GIISSPISVP FVSFFDLDLL SAKFLNFTEI MREGPSELAK
301: EREFSLTDLI CDSGEEWIQG GADEDHPVSQ YLRDISMQRV LLDDLLVAED LASVETTYDG SHAVRYEDAL S

Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)

001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T

Arabidopsis Description

RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.