CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006253.1-P	Field mustard	nucleus, plastid	99.15	99.15
CDX70564	Canola	cytosol, plastid	97.88	97.88
CDX91062	Canola	cytosol, plastid	88.11	91.81
CDX69581	Canola	nucleus, plastid	90.45	91.42
CDY09854	Canola	nucleus, plastid	90.23	91.2
CDX85597	Canola	cytosol, plastid	87.05	90.91
AT5G14420.2	Thale cress	nucleus, plastid	88.32	88.89
CDX91935	Canola	cytosol	74.95	77.24
CDX74310	Canola	cytosol	74.95	77.07
CDY49066	Canola	cytosol	74.31	76.09
CDY37509	Canola	cytosol	74.1	75.87
CDY49067	Canola	extracellular	23.35	73.33
VIT_14s0066g00290.t01	Wine grape	mitochondrion	67.09	68.55
KRG94356	Soybean	nucleus	62.0	68.22
CDY01855	Canola	cytosol, plastid	61.78	65.99
CDY27584	Canola	cytosol	32.48	65.95
CDX84957	Canola	cytosol	53.72	65.71
CDY56212	Canola	plastid	61.15	65.31
Zm00001d048784_P001	Maize	cytosol	42.25	64.61
TraesCS5B01G111900.1	Wheat	cytosol	32.91	64.32
Solyc02g093520.2.1	Tomato	nucleus	66.03	63.21
Os01t0908700-01	Rice	plasma membrane, plastid	59.24	62.56
GSMUA_Achr9P29460_001	Banana	nucleus	62.0	62.39
GSMUA_Achr8P01300_001	Banana	nucleus	57.32	62.21
KRG93947	Soybean	nucleus	65.18	61.9
EES04073	Sorghum	nucleus	60.3	61.87
KRH58251	Soybean	nucleus	64.33	61.71
TraesCS3B01G449200.1	Wheat	cytosol	61.15	61.67
TraesCS3D01G408900.1	Wheat	cytosol	60.93	61.59
GSMUA_Achr6P06710_001	Banana	nucleus	59.45	60.87
CDX84471	Canola	cytosol, mitochondrion	46.71	60.61
Zm00001d042437_P005	Maize	cytosol	60.72	60.59
PGSC0003DMT400032842	Potato	mitochondrion	62.42	60.49
CDY43775	Canola	cytosol, mitochondrion	46.71	59.95
CDY31343	Canola	cytosol	46.28	59.4
CDY39835	Canola	cytosol	46.28	59.4
TraesCS3A01G414400.2	Wheat	cytosol	53.5	57.8
CDY50776	Canola	cytosol	8.92	56.76
CDX79314	Canola	cytosol, plastid	45.65	56.73
CDX67997	Canola	cytosol	45.22	56.35
Zm00001d012101_P002	Maize	mitochondrion	60.08	55.71
CDX99619	Canola	cytosol	7.86	54.41
CDX88533	Canola	plastid	45.44	53.1
CDX87387	Canola	plastid	45.22	52.99
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	60.51	52.68
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	60.72	52.38
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	59.02	51.77
CDY27585	Canola	cytosol	14.23	51.54
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	58.81	51.39
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	38.85	50.55
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	57.96	48.84
HORVU3Hr1G092250.6	Barley	plastid	57.32	48.65
OQU79014	Sorghum	plastid	53.08	47.26
CDX85680	Canola	mitochondrion, plastid	9.98	31.97
CDY52873	Canola	plastid	20.59	31.7
CDX72278	Canola	plastid	22.72	28.84
CDX98983	Canola	cytosol, plastid	13.8	26.53
CDY03984	Canola	cytosol	15.5	24.58
CDY00235	Canola	cytosol	20.38	16.55
CDX98984	Canola	cytosol	20.59	16.52
CDX70026	Canola	cytosol	20.59	16.47
CDX78287	Canola	cytosol	20.38	16.35
CDY25816	Canola	cytosol	1.7	16.33
CDX81044	Canola	cytosol	20.17	16.18
CDX86951	Canola	cytosol	19.75	16.03
CDY06335	Canola	cytosol	19.32	15.61
CDY22660	Canola	cytosol	19.11	15.49

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	GO:A0A078CN51	EnsemblPlants:CDX78576	ProteinID:CDX78576
ProteinID:CDX78576.1	ncoils:Coil	InterPro:Copine	EnsemblPlantsGene:GSBRNA2T00129986001	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857
PANTHER:PTHR10857:SF28	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004EDD9E5	InterPro:VWF_A
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

BnaA03g04880D

Coordinates

chrLK031815:-:1365629..1368447

Molecular Weight (calculated)

51791.5 Da

IEP (calculated)

5.177

GRAVY (calculated)

-0.548

Length

471 amino acids

Sequence
(BLAST)

001: MGTGNSKESW RQESSSSSFR SASASSASPS SSSWASHQSY PQYGPESYNY PPTPSYAPPP PPEYAQPPPA PSYSTQPYSQ PPSYSHGNDK KRLERKFSKI
101: SDEYSSLEQV TEALARAGLE SSNLIVGIDF TKSNEWTGAR SFNRKSLHYI GNNPNPYEQA ITIIGRTLAA FDEDNLIPCY GFGDASTHDQ DVFSFNPEDR
201: FCNGFEEVLG RYKEIVPQLK LAGPTSFAPI IDMAMTIVEQ SGGQYHVLVI IADGQVTRSV DTENGQLSPQ EQKTVEAIVQ ASKLPLSIVL VGVGDGPWDM
301: MREFDDNIPS RAFDNFQFVN FTEIMSKNKA QSLKETEFAL SALMEIPQQY KATLELSLLG RRNGNIQERF PLPPPMHGGG SSFNNKPKTN RVPSFKPSVP
401: PYPSESYPVR SSPAPPPATI SASDNQLCPI CLSSPKDMAF GCGHQTCCDC GPDLEMCPIC RAPIQTRIKL Y

Best Arabidopsis Sequence Match ( AT3G01650.1 )
(BLAST)

001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY

Arabidopsis Description

RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.