Factsheet for PGSC0003DMT400040712

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g053870.2.1	Tomato	plastid	88.22	94.68
KRH43661	Soybean	cytosol	52.07	75.0
VIT_19s0085g01000.t01	Wine grape	extracellular	56.41	70.91
CDX67997	Canola	cytosol	53.51	68.52
CDX79314	Canola	cytosol, plastid	53.1	67.81
GSMUA_Achr7P03440_001	Banana	cytosol	42.98	66.45
CDX87387	Canola	plastid	54.96	66.17
CDX88533	Canola	plastid	54.96	66.0
Bra035112.1-P	Field mustard	plastid	54.55	65.67
AT1G79380.1	Thale cress	mitochondrion	53.51	64.59
TraesCS7A01G308900.1	Wheat	mitochondrion	53.1	64.09
KRH13149	Soybean	cytosol, plastid	55.17	64.03
Os08t0135400-01	Rice	plasma membrane	52.48	63.34
GSMUA_AchrUn_...	Banana	mitochondrion	54.34	63.22
KRH44829	Soybean	nucleus, plastid	55.37	63.06
TraesCS7D01G305600.1	Wheat	mitochondrion	52.69	62.81
CDY50776	Canola	cytosol	9.5	62.16
CDX99619	Canola	cytosol	8.68	61.76
Zm00001d035211_P001	Maize	mitochondrion	51.24	61.39
EES13310	Sorghum	mitochondrion	50.62	60.05
TraesCS7B01G208900.1	Wheat	mitochondrion	50.83	58.57
PGSC0003DMT400032842	Potato	mitochondrion	45.04	44.86
PGSC0003DMT400049766	Potato	extracellular	10.74	44.07
PGSC0003DMT400039186	Potato	cytosol	44.83	22.6

Protein Annotations

EntrezGene:102578626	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	InterPro:Copine	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	InterPro:IPR001841
InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M1BAA1	PFAM:PF07002	PFAM:PF13920
EnsemblPlantsGene:PGSC0003DMG400015742	PGSC:PGSC0003DMG400015742	EnsemblPlants:PGSC0003DMT400040712	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF47
SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000296F347	InterPro:VWF_A	RefSeq:XP_015159953.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

Copine I [Source:PGSC_GENE;Acc:PGSC0003DMG400015742]

Coordinates

chr5:-:49350784..49356735

Molecular Weight (calculated)

53374.9 Da

IEP (calculated)

8.469

GRAVY (calculated)

-0.569

Length

484 amino acids

Sequence
(BLAST)

001: MGNIFRSTLH KKSSRSSSDC SSSRGTRSRE ISSFQSSINE NFRSIPVKNL SSGSGSVSSK KDWSNCSEKE PGSVNSKKDS SNCSEKEPVS VNSKKDSSNC
101: SEKEPVSVNS KKDSSNCSKK ETEKMMKDKK NKYYYIPDNF KSVDQVTLAL RESGLESSNL IIGIDFTKSN EWTGKVSFNN KSLHAIGNSV NPYEKAISII
201: GKTLSPFDED NLIPCFGFGD ATTHDQDVFS FHSDHSPCHG FEEVLACYKK IVPNLQLSGP TSYGPVVDAA VDIVERTGGQ YHVLVIIADG QVTRSVNTSD
301: SELSQQEENT IKSIVTASMY PLSIVLVGVG DGPWEDMQKF DDRIPAREFD NFQFVNFTAI MKKNTSDSEK EAAFALAALM EIPIQYKAAR ELGLLGKRTG
401: KAKKVVPRPP PIPYSRRMAI PTRHQSSFSG SPQNEQNQAC PVCLIGTKDM AFGCGHMTCR ECGPKVSDCP ICRRRITSRI RLYT

Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)

001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T

Arabidopsis Description

RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.