Factsheet for PGSC0003DMT400049766

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
cytosol 1
plastid 2
mitochondrion 1
extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040712	Potato	nucleus, plastid	44.07	10.74
PGSC0003DMT400032842	Potato	mitochondrion	39.83	9.67
Os09t0565200-02	Rice	extracellular	14.41	5.28
PGSC0003DMT400039186	Potato	cytosol	42.37	5.21
Bra007134.1-P	Field mustard	mitochondrion	8.47	2.75
Solyc10g045520.1.1	Tomato	cytosol	1.69	1.44
Os09t0565300-01	Rice	cytosol	0.85	1.04
Os09t0565350-00	Rice	cytosol	1.69	0.45

Protein Annotations

EnsemblPlants:PGSC0003DMT400049766	EnsemblPlantsGene:PGSC0003DMG400019332	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR10857	PANTHER:PTHR10857:SF104	PFAM:PF13920	PFscan:PS50089	PGSC:PGSC0003DMG400019332
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00029498E7	UniProt:M1BPA6	MapMan:35.1

Description

Copine I [Source:PGSC_GENE;Acc:PGSC0003DMG400019332]

Coordinates

chr9:+:48762140..48764732

Molecular Weight (calculated)

13240.1 Da

IEP (calculated)

8.497

GRAVY (calculated)

-0.288

Length

118 amino acids

Sequence
(BLAST)

001: MAKKETAFAL AALMEIPFQY RATQRLRFRE SNTGPRTRPF PPPREVIDHD FAVKSVPHVT SYEPVDSGAA EQVCPICLTN PKDMAFGCGH LTCKECGATI
101: QLCPLCREPI KTRIRLYS

Best Arabidopsis Sequence Match ( AT5G63970.1 )
(BLAST)

001: MNMSNKRNQQ PSYIADHFSS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRYSFNRKS LHAIGKRQNP YEKAISIIGR TLSPFDEDDL IPCFGFGDVT
101: TRDQYVFSFY PENKSCDGLE NAVKRYREIV PHLKLSGPTS FAPVIDAAIN IVEQNNMQYH VLVIIADGQV TRNPDVPLGR LSPQEEATMN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHREFDNF QFVNFTKIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL NRKPVRSSHQ HHKPLPPPPE VIERDNAVRS
301: VPNQMTETAE KSDRLAPSTV PVCPICLTNP KDMAFSCGHT TCKECGVVIT TCPLCRQPIT TRIRLYT

Arabidopsis Description

RGLG3E3 ubiquitin-protein ligase RGLG3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.