CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035211_P001	Maize	mitochondrion	91.91	92.82
TraesCS7A01G308900.1	Wheat	mitochondrion	81.37	82.79
TraesCS7D01G305600.1	Wheat	mitochondrion	81.86	82.27
Os08t0135400-01	Rice	plasma membrane	79.9	81.3
TraesCS7B01G208900.1	Wheat	mitochondrion	77.7	75.48
KRH43661	Soybean	cytosol	58.82	71.43
GSMUA_AchrUn_...	Banana	mitochondrion	72.3	70.91
GSMUA_Achr7P03440_001	Banana	cytosol	51.96	67.73
VIT_19s0085g01000.t01	Wine grape	extracellular	60.05	63.64
CDX67997	Canola	cytosol	57.11	61.64
CDX79314	Canola	cytosol, plastid	56.62	60.95
CDX87387	Canola	plastid	59.31	60.2
CDX88533	Canola	plastid	59.31	60.05
Bra035112.1-P	Field mustard	plastid	58.82	59.7
KRH13149	Soybean	cytosol, plastid	59.8	58.51
AT1G79380.1	Thale cress	mitochondrion	57.35	58.35
CDY50776	Canola	cytosol	10.54	58.11
KRH44829	Soybean	nucleus, plastid	59.56	57.18
KXG34172	Sorghum	nucleus	53.19	56.07
CDX99619	Canola	cytosol	9.31	55.88
Solyc05g053870.2.1	Tomato	plastid	60.54	54.77
KXG25698	Sorghum	cytosol	53.19	53.98
PGSC0003DMT400040712	Potato	nucleus, plastid	60.05	50.62
KXG20338	Sorghum	nucleus	55.15	50.34
EES04073	Sorghum	nucleus	56.37	50.11
EER98488	Sorghum	endoplasmic reticulum, golgi	37.99	49.52
OQU79014	Sorghum	plastid	51.72	39.89
OQU79015	Sorghum	mitochondrion	6.62	32.53
KXG21864	Sorghum	cytosol	22.06	15.38
KXG30293	Sorghum	cytosol	18.14	12.8

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	EntrezGene:8076530	UniProt:C5YMZ0	InterPro:Copine
EnsemblPlants:EES13310	ProteinID:EES13310	ProteinID:EES13310.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605
GO:GO:0009607	GO:GO:0009611	GO:GO:0009719	GO:GO:0009867	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0042742	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	ProteinID:OQU79841.1	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857
PANTHER:PTHR10857:SF47	SMART:SM00184	SMART:SM00327	EnsemblPlantsGene:SORBI_3007G030900	SUPFAM:SSF53300	SUPFAM:SSF57850
unigene:Sbi.1334	UniParc:UPI0001A8735B	InterPro:VWF_A	RefSeq:XP_002443815.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:2789207..2792525

Molecular Weight (calculated)

44103.3 Da

IEP (calculated)

7.716

GRAVY (calculated)

-0.299

Length

408 amino acids

Sequence
(BLAST)

001: MGGVLGALLH RRSGGRPPAQ GTRNRHLGLT RQPSTYDATA AAAGGHRKAM LSKKYSYIPD TYTSLDQVAA ALREQGLESS NLILGIDFTK SNEWTGKQSF
101: GGQSLHRISD DAPNPYEQAI SIIGKTLAPF DEDNLIPCFG FGDATTHDNN VFSFHRDNTP CHGFEEVLAC YRTVVPHLRL SGPTSFAPIV EAAVDIVDRS
201: GGQYHVLVIV ADGQVTRSVD TGDGDLSPQE KRTVDSIVMA SSYPLSIVLV GVGDGPWDDM RRFDDKLPAR DFDNFQFVNF TSIMSRAATA QQKESAFALA
301: ALMEVPIQYK ATMELGILGR STGNAKRVSP APPPLPNAQR QSSLRRGASN VGAAAAPRDD QVCPICLTNA KDLAFGCGHM TCRECGESLT RCPICRQPIR
401: SKLRLYSG

Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)

001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T

Arabidopsis Description

RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.